Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02270 ATGGCTGGGCAATCAAACCATGAGCTTCTACTGTTTTCAGCAGAGGAGCTTGAGTTCATTGCTGAAGATGAGATCGTGGACATTGTACCCAATCTCAAAATGGGTCCTCTGAATTTCATTTCTGGAGATTTTGGCCCATTTACGCCACAGATTGTTACACAAGTACCGCTGTGGTTGGCCATTGCTCTCAAGAAGAGAGGCAAGTGCTCCATTCGCCCTCCCCAATGGATGTCTGTTGAGAAGTTGAGTCAAGTTTTGGAGGCAGAGCGAGACTCTCAAGAGATGTCAGATCAATTGCCATTTCATTATGTGGAAATCTCAAGACTTCTTTTTGATCATGCACGTGACAACATTCCTGATGTATATATGGTGAGGTCTCTAATTGAGGACATCAGAAATGTAAGGTTCCATAAAGTTGAAACTGATTTGGAAGCATTTAATGGTCGTACAATCGCTGTTAAGATAAAAAATTTATCTGCAATGGAAGTGAATATTGTTCATCCATTTATTGGAAGAGCTTTACAGGCATTTTATAAGCATGATAGTCCAGAGTTGATACCAGACCCAGAGAGAGTTTCTGATAGGCGCCCCCAAGTTGTCAACAATGCCCCAAGAAGACAACTACGAAGATAG 633 0.4186 MAGQSNHELLLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFTPQIVTQVPLWLAIALKKRGKCSIRPPQWMSVEKLSQVLEAERDSQEMSDQLPFHYVEISRLLFDHARDNIPDVYMVRSLIEDIRNVRFHKVETDLEAFNGRTIAVKIKNLSAMEVNIVHPFIGRALQAFYKHDSPELIPDPERVSDRRPQVVNNAPRRQLRR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02270 210 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 9 204 IPR007257 GO:0005634|GO:0006260
Pumo5g02270 210 FunFam DNA replication complex GINS protein PSF2 78 193 - -
Pumo5g02270 210 SUPERFAMILY GINS helical bundle-like 73 181 IPR036224 -
Pumo5g02270 210 CDD GINS_B_Psf2 13 74 - -
Pumo5g02270 210 PIRSF GINS_PSF2 2 210 IPR007257 GO:0005634|GO:0006260
Pumo5g02270 210 MobiDBLite consensus disorder prediction 187 210 - -
Pumo5g02270 210 Pfam GINS complex protein 53 162 IPR021151 -
Pumo5g02270 210 Gene3D - 78 186 - -
Pumo5g02270 210 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Pumo5g02270 210 CDD GINS_A_psf2 66 182 - -
Pumo5g02270 210 SUPERFAMILY PriA/YqbF domain 12 71 - -
Pumo5g02270 210 Gene3D - 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02270 Pumo-Chr5 60811732 60819559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02270 1 146 Core DNA Replication Machinery Family AT3G12530 68.493 2.40e-73 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02270 K10733 - gmx:100780528 400.979