Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02269 ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCGGCATCTGGGCCCCACTTCTCCGGCCTGAGACTCGACGGCCTGCTGCCGTCCTCCGCCACAGCCTCCCCCACTCCCGATTCAACCCTACCCCCCGATTCCCTCCCCAATCAACCCTTCGTCATAGGAGTTTCGGGAGGTACTGCCTCGGGAAAAACCACCGTCTGCGACATGATCATTCAGCAACTCCACGATCACCGCGTCGTCCTCGTCAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGAAACGCGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCATGAGGAAGCTCATCAGTGGCCAGGGCGTGCACGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTCAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCATGATCAGGGTGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATCTCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTTCAGATAAGGGGGATGCATACATTGATTCGTGACCGAGACATATCAAAGCATGATTTCGTATTTTATTCAGATCGACTTATACGGCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGTATTAAAATTGGTAAAATTCTGATTCACCGGGACGGAGACAACGGAAAACAGCTTATATATGAGAAGCTTCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGTGTGTGTAAAAGGTTTCCATCATTGAAGATTGTGACATCTGAGATTGACGTTGAATTAAACGAAGAGTATCGCGTTATCCCAGGATTGGGTGAATTTGGTGATCGCTACTTCGGTACCGACGATTGA 1422 0.4592 MPEETTSIDYVMEAASGPHFSGLRLDGLLPSSATASPTPDSTLPPDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELKRVHEYNFDHPDAFDTEQLLECMRKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHLRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVELNEEYRVIPGLGEFGDRYFGTDD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02269 473 ProSiteProfiles UvrC family, homology region profile. 158 241 IPR001162 GO:0009381
Pumo5g02269 473 Gene3D - 256 471 IPR029057 -
Pumo5g02269 473 FunFam Uridine kinase 256 471 - -
Pumo5g02269 473 PRINTS Uridine kinase signature 82 93 - -
Pumo5g02269 473 PRINTS Uridine kinase signature 220 233 - -
Pumo5g02269 473 PRINTS Uridine kinase signature 184 194 - -
Pumo5g02269 473 PRINTS Uridine kinase signature 198 209 - -
Pumo5g02269 473 PRINTS Uridine kinase signature 127 142 - -
Pumo5g02269 473 PRINTS Uridine kinase signature 52 69 - -
Pumo5g02269 473 Gene3D - 49 255 IPR027417 -
Pumo5g02269 473 Pfam Uracil phosphoribosyltransferase 270 471 - -
Pumo5g02269 473 Pfam Phosphoribulokinase / Uridine kinase family 54 240 IPR006083 GO:0005524|GO:0016301
Pumo5g02269 473 CDD UMPK 54 252 IPR000764 -
Pumo5g02269 473 NCBIfam uridine kinase 52 252 IPR000764 -
Pumo5g02269 473 SUPERFAMILY PRTase-like 255 472 IPR029057 -
Pumo5g02269 473 FunFam Uridine kinase 49 255 - -
Pumo5g02269 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 245 IPR027417 -
Pumo5g02269 473 PANTHER URIDINE KINASE 49 382 - -
Pumo5g02269 473 CDD PRTases_typeI 329 444 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02269 Pumo-Chr5 60796873 60811177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02269 1 473 PRT Gene Family AT5G40870 85.744 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02269 K00876 - gmx:100780005 900.197