Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02263 ATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTTTCTGCAGGCCTAGATTTGGGAAAAGAAGGACCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGATCAAATGGCGCTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCAGGAGTTTGTGCAGCTTTCCGGGCTCCAGTTGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTCAGCACAGCTGTGGTGGTGGTGGTGCTTAGGGCCTTCATTGAAATCTGCCATTCTGGGAAATGTGGCCTTTTTGGTGAAGGAGGATTGATCATGTTTGACGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATCGTCCTTGTTGTAGTCATTGGAATCATTGGTGGGGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAAAAAGGAAGAATGCATAAACTCCTCCTCAGTCTTGCAGTTGCACTCTTCACATCAATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATCCATCACTTCCAGAGTCAGCCTGCCCCACCAATGGACGGTCTGGAAATTTCAAACAATTCAACTGCCCGCCTGGCTTCTACAATGATCTTGCCACTCTGCTGCTTACCACTAATGATGATGCCGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATACCAACCCTTGCCCCTCGTAATTTTCTTTGTACTCTATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCAATCATTCTTATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGGCCTCACACAAACATTGACCAAGGGCTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTGAAGCCATCAGTGGTTACCCTCCGCGGAGTAGAAAAGGTAGCCAAAATAGTAGATGTCTTGAAAAACACTACACATAATGCTTTCCCTGTTATGGATGATGGGGGGGTAGTACCACCAGTAGTAGGACAGGCCAGTTGGGGAACAGAATTGCATGGACTAATTCTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCCTTAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACCAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCACCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTGCTGGCCCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGTAGAGAAAAGAGGAATTGA 1830 0.4568 MFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKVLRLYNLINQKGRMHKLLLSLAVALFTSMCQYGLPFLAKCTPCDPSLPESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLPLVIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLRGVEKVAKIVDVLKNTTHNAFPVMDDGGVVPPVVGQASWGTELHGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02263 609 PRINTS Plant CLC chloride channel signature 109 119 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo5g02263 609 PRINTS Plant CLC chloride channel signature 127 134 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo5g02263 609 PRINTS Plant CLC chloride channel signature 252 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo5g02263 609 PRINTS Plant CLC chloride channel signature 95 103 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo5g02263 609 Gene3D Clc chloride channel 1 403 - -
Pumo5g02263 609 SUPERFAMILY CBS-domain pair 405 589 IPR046342 -
Pumo5g02263 609 CDD CBS_pair_voltage-gated_CLC_euk_bac 421 590 - -
Pumo5g02263 609 Pfam Voltage gated chloride channel 4 381 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 Gene3D - 404 595 IPR046342 -
Pumo5g02263 609 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 594 - -
Pumo5g02263 609 ProSiteProfiles CBS domain profile. 536 602 IPR000644 -
Pumo5g02263 609 PRINTS Chloride channel signature 300 320 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 PRINTS Chloride channel signature 388 402 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 PRINTS Chloride channel signature 10 29 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 PRINTS Chloride channel signature 350 369 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 PRINTS Chloride channel signature 74 93 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 PRINTS Chloride channel signature 332 348 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo5g02263 609 SUPERFAMILY Clc chloride channel 2 403 IPR014743 -
Pumo5g02263 609 Pfam CBS domain 538 588 IPR000644 -
Pumo5g02263 609 SMART cbs_1 539 592 IPR000644 -
Pumo5g02263 609 SMART cbs_1 423 484 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02263 Pumo-Chr5 60737584 60742458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02263 1 604 Ion Channels AT3G27170 81.623 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02263 K05016 - gmx:100788620 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02263 5 60737584 60742458 Pumo5g02263 5 60737584 60742458 ECH