Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02235 ATGAACACAAATGAATGTGATACAGATGCAAATTTAATAACCACTGGATTGGATGAGATATGTTTACAAATGGATGACAATGGTAACGACCAGACGAACATTGATGGGGCCAAATTTGGGAGTGAAGGTGAAGATGAAGATGAAGATGAAGAGGAAGTGGAGTATGTTGAGTCAGAGGAGGACACACTTAATAGAGTGGACGGACGGTATGTGTTTAACAGTAATGAAGATGGTATAGTTATCAATGATTTGGATGATATATATAACATTAAGTTAGATGAATTAACTGTTGAAGATGTGGGAAGGTTAGATTTTGTGGATTTGGAAGTTGCATACTTATTTTATTGTTGGTATGCAAGAATTAACGGTTTCTCAGTTCGTAGAAGCCACATTGTTAGGAACAAGCATGGTGAAACATTGCAACAGACATTTGTTTGTTCACGTGAAGGGTTTAGGAAAAATAAGGGAGCCACTGTGAATCGTAAAAAGCGTCGTTCCAAAAAACTAACCAGGTGTGGTTGTGAGGCAATGTTTCGTGCTCATGTGAATACTAACAGTGGCCGTTGGTATGTGACTGTGTTTAGTTTTGACCACAATCATGTGTTGTTAGATCTTGAGTTTTCAGCCCTACTACCAGCACACCGGAAGATGAATGCTACTGATGTAATGCAAATAGAGAATTACAGAAAGGTTGGCATTAGGCCTCCCCACATTTACGCTGCCTTTGCTAACAATTGTGGTGGGTTCGAGAAAGTTGGTTGGGTTATGAAAGATCTTTACAACCAAGTATCAAGACAAAGACAGGAGGAATCATCTGATGTTCGTGGTGCTTTCAAATTTTTTCAAGAATTGTCATCAAGTGACCCGTTGTTGTTTGTATCTTACACACTTGATGATGATAGGAGACTCCAACATCTATTTTGGGCTGATGGAGAGAGCCAGATGAATTATGAACTTTTTGGCGATGTGTTGGCTTTTGATGCCACATATAAGAAAAACAAGTACCTATGTCCTTTTGTGGTGTTCTCTGGAGTCAACCACCATAACCATACTGTTGTGTTTGCTGCTGCCCTTGTGACAAACGAGACTGAAGACACATATGTGTGGCTGTTGGAACAATTTTTGGAGGCTATGAAAGGGAAAGCTCCTTCTTCCATAATCACTGATGGGGATGTTGCTATGAAAAATGCAATTAGGAAAGTTTTTCCTAATGTGCACCATAGGCTATGTACGTGGCATTTGCTTCGCAATGCAAATTGCCATCTTAGGAATCGTGAATGTTTGCAACGTTTAAAAAAATGTATGTTAGGGGATTTTGATATTGATGAATTTGAGGAACATTGGAGTGAAATGGTTGCCACTTTTGGATTGGAAAATAATCAATGGATTACAGAGCTGTATGAAAAAAGGAGGAAGTGGTCTCCGGCATATATAAGAGGGAATTTCTTTGCAGGTATTCGGACAACTTCACGCTGTGAAGCCTTCCATAGCCATTGTGGAAGATACCTTCATTCAAGGATTAACCTGACAGATTTTGTGCAGCAGTTTCATTTGTGCCTTACATACTTTCGTTATAGAGAAGTTGAAGCTGACTATTTTTCAAAACATGGTGATGAAAAGTTGGAAACGAATTATCACTCTCTTGAAAGATCGGCAGATGCACACATGACTAAGGAGTTGTTTCTTCTGTTTCGTCCTTATTTGAACAAAGCTTCATTCATAAGGGTTGTTGACTGTCAAGAGATGGCAATGTCTTCTGTTTTTACAGTTTTAAAGTATCGTACTAACAAAACATGGAATGTTTCTCATTGTCCAATGGTAGAAGAGTTTAGATGTTCTTGTTTGAGAATGGAGTCATTTGGACTACCTTGTGAGCACATAATAGCTGTTCTACTTCATTTACATTATTCTGAATTTCCAAAGTCTCTGCTGTGTCAAAGGTGGTCTAAGCATGCAAAGGATGCAATTCGTGGTCTATACACTGATGGATCTACTTATTGGGATTCATATCTGTTTGCTAGATATTCAAGACTGGTTGCAATGTCCAGACAAGTTTGTGAGTATGCATATCGCGAAGAGGGTGATTATGATGACACTATTGATTTGTTGTCAGGTCAACTGACGAGGTTAAAGCTGAAGTACAGTTCTACAGCAACTACATCAAGATCACAGAATGATAGTGAGGTCGGAAATGATGATATACTTGATCCTCCTCTTGTAAGACATAAAGGATGTGGTTCAAGTACCAACAGTCAGGGGGGCAGCTCAAAAAGGGCCCAGACATGTAGCAAATGTGGTGAACGCGGCCATAACAAAAGATCTTGTACCGCTGTCAATGGCACTAGTAACCCTGTATCTGGGACACCTGTTATCCCATCAGAACAATGA 2388 0.3945 MNTNECDTDANLITTGLDEICLQMDDNGNDQTNIDGAKFGSEGEDEDEDEEEVEYVESEEDTLNRVDGRYVFNSNEDGIVINDLDDIYNIKLDELTVEDVGRLDFVDLEVAYLFYCWYARINGFSVRRSHIVRNKHGETLQQTFVCSREGFRKNKGATVNRKKRRSKKLTRCGCEAMFRAHVNTNSGRWYVTVFSFDHNHVLLDLEFSALLPAHRKMNATDVMQIENYRKVGIRPPHIYAAFANNCGGFEKVGWVMKDLYNQVSRQRQEESSDVRGAFKFFQELSSSDPLLFVSYTLDDDRRLQHLFWADGESQMNYELFGDVLAFDATYKKNKYLCPFVVFSGVNHHNHTVVFAAALVTNETEDTYVWLLEQFLEAMKGKAPSSIITDGDVAMKNAIRKVFPNVHHRLCTWHLLRNANCHLRNRECLQRLKKCMLGDFDIDEFEEHWSEMVATFGLENNQWITELYEKRRKWSPAYIRGNFFAGIRTTSRCEAFHSHCGRYLHSRINLTDFVQQFHLCLTYFRYREVEADYFSKHGDEKLETNYHSLERSADAHMTKELFLLFRPYLNKASFIRVVDCQEMAMSSVFTVLKYRTNKTWNVSHCPMVEEFRCSCLRMESFGLPCEHIIAVLLHLHYSEFPKSLLCQRWSKHAKDAIRGLYTDGSTYWDSYLFARYSRLVAMSRQVCEYAYREEGDYDDTIDLLSGQLTRLKLKYSSTATTSRSQNDSEVGNDDILDPPLVRHKGCGSSTNSQGGSSKRAQTCSKCGERGHNKRSCTAVNGTSNPVSGTPVIPSEQ 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02235 795 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 104 692 IPR031052 GO:0006355
Pumo5g02235 795 Pfam SWIM zinc finger 611 634 IPR007527 GO:0008270
Pumo5g02235 795 Pfam FAR1 DNA-binding domain 114 203 IPR004330 -
Pumo5g02235 795 MobiDBLite consensus disorder prediction 718 795 - -
Pumo5g02235 795 SMART 26again6 610 637 IPR006564 GO:0008270
Pumo5g02235 795 MobiDBLite consensus disorder prediction 744 762 - -
Pumo5g02235 795 MobiDBLite consensus disorder prediction 774 795 - -
Pumo5g02235 795 ProSiteProfiles Zinc finger CCHC-type profile. 762 775 IPR001878 GO:0003676|GO:0008270
Pumo5g02235 795 Pfam MULE transposase domain 323 417 IPR018289 -
Pumo5g02235 795 ProSiteProfiles Zinc finger SWIM-type profile. 588 635 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02235 Pumo-Chr5 59882069 59885209 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo5g02235 MULE 5e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02235 - - tpra:123884554 800.431