Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02230 ATGGATTGGGACGGGAAAGAGTTTGCTTGGGATCCACGTGGGTTGGAGCTAGCTAATGGTGAAGGTGAAGTGCAGAAGAATGAAGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGAAAAATCACTCCCAGATGCTGCTAAGGACCCAAAAGACTCAAAAACTGTGTCATCTCCATCTGGGTCATCGAAAAGATCCCGCCTTCAGAATGGATCACAGAACATGTGTTGTTCTGTGGATGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGCGAAAAGCACTCCAAAACCCCGGTTGTGTTGGTGGGGGGGAAGCAGCAAAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAACGGCTTGATGGGCATAACAGGCGCAGGAGGAAACCTCAGCCACCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTACACTTTGGTAGCCCTGAGGCATATGCCAACCCTATTATGAGGAACATGTGGCCTGCCACTGCCAAAACTGGAGCTGAATCTGGTTATGATCCTCCCCGACTCTTATACAGAATTGACAAGCCTAAGCAAGATAAGGGACATCCTCTTTGGCAAGAAAATGACCCTAAAGTAGGCAATGGTAATGAAGCAATGCCTGGAACTCCAATTTGTCAGCCTGTCCATGGCACCATTGCCCCATCAACAGGTGGAAAGAGCAGCCGAAAGCTCTCTACAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTATGGTGCAATCTAGCATCACCTGCCCAATGCAATCTCCATCAGGGTCTGTGCATTTTGATGCTGTGAATGAGTATGCATCCTCAGAAACGGAAAAAGATAAGCCTAGTGGTCAAGTATTGGTTTTTGATGCAAACACAACCAACCTTCATTACAATGGAATGCTGCAAATGGGGCTTGATGGATTGGTTGAAAATGAGGACCCACTAACACTTCCCTTCTTGTGGGAGTAG 1104 0.4701 MDWDGKEFAWDPRGLELANGEGEVQKNEEAASVDLRLGEEKSLPDAAKDPKDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPEAYANPIMRNMWPATAKTGAESGYDPPRLLYRIDKPKQDKGHPLWQENDPKVGNGNEAMPGTPICQPVHGTIAPSTGGKSSRKLSTDAKPGSFDSGCALYLLSTLQSQSPELSMVQSSITCPMQSPSGSVHFDAVNEYASSETEKDKPSGQVLVFDANTTNLHYNGMLQMGLDGLVENEDPLTLPFLWE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02230 367 Pfam SBP domain 77 150 IPR004333 GO:0003677
Pumo5g02230 367 MobiDBLite consensus disorder prediction 53 72 - -
Pumo5g02230 367 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Pumo5g02230 367 MobiDBLite consensus disorder prediction 27 52 - -
Pumo5g02230 367 FunFam Squamosa promoter-binding-like protein 14 68 138 - -
Pumo5g02230 367 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Pumo5g02230 367 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Pumo5g02230 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 303 IPR044817 GO:0003677
Pumo5g02230 367 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02230 Pumo-Chr5 59800281 59804267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02230 77 175 SBP-box Gene Family AT5G50670 66.667 1.47e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo5g02230 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02230 - - gmx:100798317 707.597