Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02229 ATGGAGAATTATTCCATGTTGTTCCCTATTTCCAACTCTTCGAGCTACCCAATTTCAACGAGTGGTGTTGGAAGCTCTCAAATTGGTAATAATAATTTTGGTGGTCAAAGCTCCAATGCGTTTCTTGGTCTAAGGCCTAGTAATAATAATGAAGGTGGTAGTGATCATGAGAAGAGAGGAGAAGGTGGTGGTGGTAGAGATGGCATGTTAATGTCTCAGATCAGTGGTAGTAGCATTAATGTGAGTGATGAGTTAGGTGGTTCGGGAAATAGTAATAAAAAGAAAGGGGAGAAGAAGGTTAGAAAGCCTAGGTATGCTTTTCAAACAAGGAGCCAGGTTGATATTCTTGATGATGGTTATCGATGGAGGAAGTATGGCCAGAAAGCTGTTAAAAACAACAAATTCCCAAGGAGCTACTACCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGCCTAACCAAAGACGAAGGGGTAGTGGTGACCACTTATGAGGGAGTGCACACACACCCAATTGAGAAGACAACAGATAACTTTGAACACATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 588 0.4201 MENYSMLFPISNSSSYPISTSGVGSSQIGNNNFGGQSSNAFLGLRPSNNNEGGSDHEKRGEGGGGRDGMLMSQISGSSINVSDELGGSGNSNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02229 195 ProSiteProfiles WRKY domain profile. 111 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g02229 195 SMART WRKY_cls 116 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g02229 195 Pfam WRKY DNA -binding domain 117 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g02229 195 Gene3D WRKY domain 100 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g02229 195 FunFam WRKY transcription factor 57 102 176 - -
Pumo5g02229 195 MobiDBLite consensus disorder prediction 15 50 - -
Pumo5g02229 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 178 IPR044810 GO:0003700
Pumo5g02229 195 SUPERFAMILY WRKY DNA-binding domain 108 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g02229 195 MobiDBLite consensus disorder prediction 71 89 - -
Pumo5g02229 195 MobiDBLite consensus disorder prediction 15 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02229 Pumo-Chr5 59764077 59766709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02229 104 195 WRKY Transcription Factor Family AT5G13080 88.043 3.96e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g02229 WRKY 1.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02229 - - gmx:100788382 296.204