Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02224 ATGGATCCCAAGGGCTCAAAGCAGCCACAGGCACAGGAGGTGGTACCAAACTTCCTCAGCCTCCCCCAACAACAACAAGGGAATAGCAACAACAACAACAACAACAACAACATGGGAGAGAACAAGCCAGCAGAGGTGAAGGATTTCCAGATAGTGGTTGCTGAGAAGGATGAGAGCAAGAAGCAGTTGGCACCAAAGAGGAGTTCCAACAAGGACAGGCACACCAAGGTTGAAGGGAGGGGAAGGAGGATAAGGATGCCTGCTCTCTGTGCAGCAAGAATCTTCCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTTCTCCAGCAGGCTGAGCCATCCATAATAGCTGCTACTGGGACTGGCACAATCCCAGCATCTGCTCTGGCTGCTGCTGGCAACTCAGTTTCACCACAAGGGGCCTCTCTTTCATCAGGGCTGCACCAAAAGATTGATGAATTGGGAGGGGCCAATATGGGGGGGTCAGGGAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACAGGCCTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCATCTGGTCCATCTAATGCCACCTTAGGCACTGAGAGCTCCAATTACCTCCAGAAAATTGGCTTCCCTGGCTTTGACTTGCCTTCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGTGGGGCTGCTCAGCAGATGCCTGGTTTGGAGCTGGGGTTATCCCAGGATGGCCATATTGGAGTCTTGAATCCACAGGCCTTGAACCAGATTTATCAGCAGATAGGTCAGGCTGGTAGTAGAGTGCATCAGCAACAGCAGCATCAGCATCAGCAGCAGCAACAACAACATCAGCAAACTCCTCCTAAGGATGATTCTCAAGGCTCAGGACAGTAG 954 0.5189 MDPKGSKQPQAQEVVPNFLSLPQQQQGNSNNNNNNNNMGENKPAEVKDFQIVVAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHQKIDELGGANMGGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSGPSNATLGTESSNYLQKIGFPGFDLPSATNMGHMSFTSILGGGAAQQMPGLELGLSQDGHIGVLNPQALNQIYQQIGQAGSRVHQQQQHQHQQQQQQHQQTPPKDDSQGSGQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02224 317 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 301 IPR005333 GO:0003700
Pumo5g02224 317 MobiDBLite consensus disorder prediction 49 80 - -
Pumo5g02224 317 MobiDBLite consensus disorder prediction 283 317 - -
Pumo5g02224 317 Pfam TCP family transcription factor 69 272 IPR017887 -
Pumo5g02224 317 MobiDBLite consensus disorder prediction 1 80 - -
Pumo5g02224 317 ProSiteProfiles TCP domain profile. 70 124 IPR017887 -
Pumo5g02224 317 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02224 Pumo-Chr5 59650615 59652699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02224 1 317 TCP Transcription Factor Family AT3G27010 54.030 4.29e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo5g02224 TCP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02224 - - vun:114191990 512.686