Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02216 ATGATCAATTCACTTTGTGGAAGCTCTTTGTCCCTCAAGAGTGAGAACAACTCCTCTAGAACCAAACTCCAACCCACTTCTTCAAATGACTCAGTTTTGCAATCCAAGAAAAATGCCACTCAATCCTCTGGTGATCTAGACCAAACTAGCCTAACCCCACCAAGCCTAAACCTTCCTTCACTCAAATTTGACTTGGATGGAGATGTGGAAGTTCAGTCACCAGATAGTTCAATGTGGGAGTCCTTTTTTGCTGACCAACTAGATGGTGATTTCATGATCTCTTCCCCAGTGAGGAATGTTCCTTCCCCACAAGCCTCTTCCTACAATTGCAACTACAACTATGCTCAAGGAATGCAAGGCCAGAGTCTCTCAGGGTGTTCCCCACCAAGGTTCTCATCATCACAAATTGGAGCCTTCAACAGCAGCCACAAAGGGAAAGGACTCAGCCCCCTCCACAGGGTGTTCAACTCACCTAACAATCAGTACATGCAGCATGTTGAGAACCTCTCACTGCCAGCAATAGAAGAGTTCTTGGAGGACTACCATCAAGGCTTGGCACTGCCCAATTCCTCAAGGTACCATCATCATGGATCAGTTGATGAAGAGTCCTCAGTGCACGGTGGTGGTGGCTCTAATTCTCAACTGTCCCAAGAGGGTGACATCTATCACCAGATGGGGTCCATGGCTAGTGCTTCTCTCTCACAGGCCCTACAACAAGAACGCTACCAAGAGAAACAGCAAAAGCAGCAAGCACAGCAACTGCAACAACAACAGCAGCAGCAGCACCAGCAAGAGAATCTGATGGTGCCTATTCCAATCGGAATCGAGCAGGAGCAAGACAGCGGGCTTCAACTGGTGCACCTGCTCCTGGCCTGCGCGGAGGCAGTGGCCAAAGAGGAATACATGCTCGCAAGAAGGTACCTCCACCACCTCAACCGCGTCGTCACCCCCTTAGGCGACTCCATGCAGCGCGTCGCGGCCTGCTTCACCGACTCCCTCAGCGCCAGGGCTCAACTCCACCCTCACTCCCAAACCCTCAACACCCTCCAAGCCCTTAACCCCCTCCAACTCCCTCGAAGTCCTCAAGATCTACCAGATCGTCTACCAAGCCTGCCCCTACGTCAAGTTCGCCCACTTCACCGCCAACCAGGCCATCTTCGAGGCCTTCGACACCGAGGAGCGCGTCCACGTCATCGACCTCGACATCCTCCAGGGCTACCAGTGGCCCGCCTTCATGCAGGCCCTCGCGGCACGTCCGCCGGGCGCGCCGTTCCTCAGGATCACGGGAGTGGGCCCCTCGTTGGACGCCGTCCGCGAGACCGGACGGTGTCTGACCGAGCTGGCCCACTCCCTCCGCATCCCCTTCGAGTTCCACGCCGTCGGGGAGCAACTTGA 1395 0.5455 MINSLCGSSLSLKSENNSSRTKLQPTSSNDSVLQSKKNATQSSGDLDQTSLTPPSLNLPSLKFDLDGDVEVQSPDSSMWESFFADQLDGDFMISSPVRNVPSPQASSYNCNYNYAQGMQGQSLSGCSPPRFSSSQIGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYHQGLALPNSSRYHHHGSVDEESSVHGGGGSNSQLSQEGDIYHQMGSMASASLSQALQQERYQEKQQKQQAQQLQQQQQQQHQQENLMVPIPIGIEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARAQLHPHSQTLNTLQALNPLQLPRSPQDLPDRLPSLPLRQVRPLHRQPGHLRGLRHRGARPRHRPRHPPGLPVARLHAGPRGTSAGRAVPQDHGSGPLVGRRPRDRTVSDRAGPLPPHPLRVPRRRGAT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02216 464 Coils Coil 234 264 - -
Pumo5g02216 464 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 240 340 IPR005202 -
Pumo5g02216 464 MobiDBLite consensus disorder prediction 192 217 - -
Pumo5g02216 464 MobiDBLite consensus disorder prediction 233 257 - -
Pumo5g02216 464 Pfam GRAS domain family 285 349 IPR005202 -
Pumo5g02216 464 MobiDBLite consensus disorder prediction 379 464 - -
Pumo5g02216 464 ProSiteProfiles GRAS family profile. 276 464 IPR005202 -
Pumo5g02216 464 MobiDBLite consensus disorder prediction 380 405 - -
Pumo5g02216 464 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02216 Pumo-Chr5 59501289 59503723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02216 279 336 GRAS Transcription Factor Family AT1G50420 44.828 1.84e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo5g02216 GRAS 7.5e-11 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02216 - - gmx:100805039 498.819