Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02215 ATGCTGAACCGCCGCGTCGGGGAGGCGCTCGCTGTCAACGCCGTCAACCGCCTCCACCGCGTCCCGGGGAACCACTTGGGAAATTTGTTGACCATGATACGGGACCAGGCTCCTAACATAGTGACATTAGTGGAGCAAGAAGCGAGTCATAATGGACCTTACTTTCTTGGGCGGTTCCTCGAGGCCTTGCATTACTACTCCGCCATCTTCGACTCGCTGGACGCGACGTTTCCGGCGGAGTCGGCGCAGCGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATACGGAACATTGTGGCGTGCGAGGGGCCGGAGAGGTTCGAACGGCACGAGAGGTTGGAGAAGTGGCGGAAGATTATGGAGGGGAAGGGGTTTAAGGGGGTGGCGCTGAGTCCGAACGCGGTGACTCAGTCGAAGATATTGTTGGGGTTGTACTCGTGTGAGGGGTATAGGTTGACGGAGGATAAAGGGTGCTTGTTGCTTGGGTGGCAGGATAGGGCCATTGTTGCTGCGTCTGCATGGCGATGTTGA 534 0.5805 MLNRRVGEALAVNAVNRLHRVPGNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVACEGPERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWRC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02215 177 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 171 IPR005202 -
Pumo5g02215 177 ProSiteProfiles GRAS family profile. 1 176 IPR005202 -
Pumo5g02215 177 Pfam GRAS domain family 2 176 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02215 Pumo-Chr5 59500739 59501272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02215 1 177 GRAS Transcription Factor Family AT1G66350 46.703 5.43e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo5g02215 GRAS 2.3e-63 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02215 - - gmx:100775374 356.295