Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02200 ATGTCTCTGAAACTTCTTCAGGACTTAGACCAGAAGAAAACCCAACAGAGGAGAGTGACAATTCTAATAAGGCTCAGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGATTTGGCACTTGTTTACAAGGGAACGATCGGGAAAACAAACCAGGTTGTAGCTGTTAAAAGACTTGATACTACTGGTGTCCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATTCCAACCTTGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCTTTAGAATCTCATCTTCATGATGTTTCACCTGATGCAGAACCACTTGATTGGAATACCAGAATGATGATAGCTTGTGGGGCAGCAAAAGGACTAAATTATCTGCACCATGAAGCAAAGCCTTCTGTTATATACAGGGATCTGAAATCATCCAACATACTATTGGATGAAGGTTTCCATCCAAAACTTTCTGATTTTGGGCTTGCAAAATTTGGTCCAACCGGAGACCAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACTATGAGATCTGACATTTACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAAAGCATATGATGATAACGGTGGCCCTGAACAGCATCTTGTAGAATGGGCACGCCCCATGTTTAGAGACAAAAGGAGTTTTCCAAGATTGGTAGATCCACGGCTTAAAGGTCGCTACCCAGGATCGGCTCTACCTATGGCCATTGAATTGGCAGCCATGTGTCTTCGTGAAGAGCCGCGTCAACGGCCTAATGCAGGTGATATAGTGGAAGCTCTAGAATTCTTGTCATCCAAGCAATATACCCCAAAAGTATCCAACACAGTCAACACAACAGGGATGGAGAGTGGAGAATCTCCAAAAGAAACGACTGCGATTTTCCCTCAAGAATCAGAAAGAGAGCGAGCTGTTGCAGAGGCCAAGCTGTGGGGGGAGAGGTGGAGGCAGAGACGACAAAGTGAGCAAAGTAGTCCGGAGGAATCAAATAGGTAG 1152 0.4392 MSLKLLQDLDQKKTQQRRVTILIRLRYLPSESLQQQQKILGMKPLLGKVDLALVYKGTIGKTNQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDAEPLDWNTRMMIACGAAKGLNYLHHEAKPSVIYRDLKSSNILLDEGFHPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTMRSDIYSFGVVLLELITGRKAYDDNGGPEQHLVEWARPMFRDKRSFPRLVDPRLKGRYPGSALPMAIELAAMCLREEPRQRPNAGDIVEALEFLSSKQYTPKVSNTVNTTGMESGESPKETTAIFPQESERERAVAEAKLWGERWRQRRQSEQSSPEESNR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02200 383 Gene3D Phosphorylase Kinase; domain 1 46 117 - -
Pumo5g02200 383 MobiDBLite consensus disorder prediction 330 355 - -
Pumo5g02200 383 SUPERFAMILY Protein kinase-like (PK-like) 42 316 IPR011009 -
Pumo5g02200 383 Gene3D Transferase(Phosphotransferase) domain 1 118 336 - -
Pumo5g02200 383 Pfam Protein kinase domain 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02200 383 CDD STKc_IRAK 46 314 - -
Pumo5g02200 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Pumo5g02200 383 SMART serkin_6 40 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02200 383 MobiDBLite consensus disorder prediction 330 346 - -
Pumo5g02200 383 FunFam Serine/threonine-protein kinase PBS1 117 331 - -
Pumo5g02200 383 PANTHER OS07G0668900 PROTEIN 28 325 - -
Pumo5g02200 383 ProSiteProfiles Protein kinase domain profile. 40 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02200 Pumo-Chr5 59244741 59251200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02200 4 377 Glycoside Hydrolase AT3G07070 50.398 1.47e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pumo5g02200 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02200 K13430 - gmx:100809298 586.645