Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02194 ATGGAAGTCTTAAACCCAATAGAGGGCAAGACCTACAAGCTCCCAGTGGGGTACAGATTTGATCCCAGTGATGAAATTCTTGCTGGTTACTATCTGTGGAAGAGGATCATGGCCCAACCACTCCCTAATGACCTCATTCAAGACTGTGATGTTTACCAAACAGTGCCTTGGGAGCTGCCAGGAGGTGGTAAGTATTTGAACTGGCAGAGGTTTTTCTTCCATGATGTGATGACACGTGTATTTGAAAACCTGGACAAGAGAGAAGCCGGAAATGGCCAATGGAGAACAGTGGAGAACGGCCAAGAAGTTGAGCTCTCTAACGAACAGGTTATTGGGAAAAGAAACGTTTTGGTTTTCTGGGAAAACAAGGGCAATTGTCTTGCCAAAACAAATTGGGTGATGCATGAGTTTCGCCTTGCCTTAAAATCACATCCTTCTAAGATGTCAGCTGTGGCTGTGTACCGCATATTCGAGATGAAGAAGGAGGGAAGAAAGGGAAGGAGGGCACAAGGGTCTGAAGGGGAGACCTCTAGCAGCAGCAGCAGTGAGGAAGAGGCCATGGATGACACACCCACTGTCATTGATTTCAAAGTGGACAGTGGCACTGTGACTGGTCCTCCCTCACCTGCCACCAGTGAAACTGCCTAA 648 0.4769 MEVLNPIEGKTYKLPVGYRFDPSDEILAGYYLWKRIMAQPLPNDLIQDCDVYQTVPWELPGGGKYLNWQRFFFHDVMTRVFENLDKREAGNGQWRTVENGQEVELSNEQVIGKRNVLVFWENKGNCLAKTNWVMHEFRLALKSHPSKMSAVAVYRIFEMKKEGRKGRRAQGSEGETSSSSSSEEEAMDDTPTVIDFKVDSGTVTGPPSPATSETA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02194 215 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Pumo5g02194 215 MobiDBLite consensus disorder prediction 164 215 - -
Pumo5g02194 215 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Pumo5g02194 215 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pumo5g02194 215 MobiDBLite consensus disorder prediction 172 187 - -
Pumo5g02194 215 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Pumo5g02194 215 PANTHER NAC TRANSCRIPTION FACTOR 56 14 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02194 Pumo-Chr5 59143612 59145266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02194 14 150 NAC Transcription Factor Family AT3G04070 33.566 1.83e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g02194 NAM 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02194 - - gmx:100305869 350.903