Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02190 ATGGCAGACCCAACAGCTATCTATGAGTTTTTGAAGCAGCCGTCAAACAGTGGTGGTGCAAAGAGAGCACCGCCACCACCTCCACCACCGTCCTCCGCCGCCGCCGCCACTACCACCCGCACCTTCCAATGCCACTTCTGCAACCGCAAGTTCTTCACCTCTCAAGCCCTCGGCGGCCACCAAAACGCCCACAAGCTGGAGCGCGCCGCCGCAAGGAGATCCAACAACGTCAACGTCGTCCCTTTCCACGCTAACGGGCCTCTGTCTCCACCCCCGCTGCCCCTCGAGCCCATAGAGCCCAAGCCCAGGCCCATGCTCGAACCCACTTCCTCCCCCACCGAGCTTTTTTTCCACCACCACCCTCCCTACTGGCTCGATGTGGTGGAGCCCTTGCAGTTTCAAACCACCCATCACCACCTCACCCCCTCTTTCCCTGTTCCATTCCACGCTGCATCTTCCACTTCCACTTCCACTACTCCCCAGCAACAAGTTCTCTCTCACAATGTTGATGCTTCCGACCACGTCAACCTCGACCTCACTCTCCGCTTGTGA 552 0.5924 MADPTAIYEFLKQPSNSGGAKRAPPPPPPPSSAAAATTTRTFQCHFCNRKFFTSQALGGHQNAHKLERAAARRSNNVNVVPFHANGPLSPPPLPLEPIEPKPRPMLEPTSSPTELFFHHHPPYWLDVVEPLQFQTTHHHLTPSFPVPFHAASSTSTSTTPQQQVLSHNVDASDHVNLDLTLRL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02190 183 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Pumo5g02190 183 MobiDBLite consensus disorder prediction 1 37 - -
Pumo5g02190 183 Gene3D Classic Zinc Finger 31 81 - -
Pumo5g02190 183 PANTHER ZINC FINGER PROTEIN JAGGED 19 183 IPR045320 GO:0003700
Pumo5g02190 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Pumo5g02190 183 SUPERFAMILY beta-beta-alpha zinc fingers 38 69 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02190 Pumo-Chr5 59057091 59057645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02190 40 77 C2H2 Transcription Factor Family AT5G14010 73.684 2.31e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02190 - - gmx:102659862 211.075