Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02181 ATGTTGCCCTGCGATTACTGCGACTCCAAACCCGCCTTACTCTTCTGCAGAGCAGATTCGGCCAAACTGTGTTTAGTCTGTGACCAGCACGTGCACGCCGCCAACGCTCTCTCCCTCAAGCACGTGCGCTACCAGATTTGCGACACCTGCAAGAGCGACACCGCCGCTGTCCGCTGCTCCACCGACAACCTCGCCCTCTGCCACCACTGCGACGTCGACACCCACGGCACCTCCGCTGCCTCCTCCCTCCACCACCGCCACCGACTCCACGGCCTCTCCGGCTGCCCCACCGTCCCCGAGATTGCCTCCGCGCTGGGCCTCGATTTCCGGCCCAATAACCCGGCCCAGGAGCCCGTGGTCCCCACCGCCAGCACCGGCAAGTTCCGCCACGAGGTGTACGAGCAGGTCCTCGAAATCGCGCGCAAGAGGAACGGGCTCGGCGCCACCACCGAGAACGTTGAACTCGAGTTCGACTCGGGAAACGACGTCGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTCTGCTCATGTTTCCCAATTCTGAATCTGAATTTGACGCTAGAAAAAGTAACGATAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAATAATCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGATTGCAGTGAACCAAGAGTGGTGACATATGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTGCACAATATGAATTACTCGACAATTGGTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGAGAGCAACAAGAAAGCTAGAGGTGGGTTATCATCAGAGTCCAAATTGTTTGAATCCATACCGTACAGTGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTGGGTGGGAATGAAAATGTTAGCACCTTAAAAGCCAGGGTTAGCTTGGAAGAGTTGGCCAAGAATAGAGGTGATGCCATGTTACGCTATAAGGAGAAGAAGAAAAGTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCGAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA 1155 0.5212 MLPCDYCDSKPALLFCRADSAKLCLVCDQHVHAANALSLKHVRYQICDTCKSDTAAVRCSTDNLALCHHCDVDTHGTSAASSLHHRHRLHGLSGCPTVPEIASALGLDFRPNNPAQEPVVPTASTGKFRHEVYEQVLEIARKRNGLGATTENVELEFDSGNDVVDEMLMQQTPFTSLLMFPNSESEFDARKSNDNGYGTEAGDLLWNYNNPAYQPPQVWDFQLQKSRDCSEPRVVTYDGLEVPKSFQDVHNMNYSTIGDDILSRNNQSDQSSSSHAKKKEESNKKARGGLSSESKLFESIPYSGTNNVVVMEHLVGGNENVSTLKARVSLEELAKNRGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02181 384 MobiDBLite consensus disorder prediction 258 290 - -
Pumo5g02181 384 CDD Bbox1_BBX-like 3 46 - -
Pumo5g02181 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 380 - -
Pumo5g02181 384 MobiDBLite consensus disorder prediction 258 272 - -
Pumo5g02181 384 ProSiteProfiles Zinc finger B-box type profile. 42 92 IPR000315 GO:0008270
Pumo5g02181 384 MobiDBLite consensus disorder prediction 273 288 - -
Pumo5g02181 384 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Pumo5g02181 384 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Pumo5g02181 384 SMART bboxneu5 1 46 IPR000315 GO:0008270
Pumo5g02181 384 Pfam CCT motif 337 379 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02181 Pumo-Chr5 58844342 58848037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02181 1 381 C2C2-CO-like Transcription Factor Family AT2G33500 37.232 5.01e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo5g02181 CCT 1.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02181 - - gmx:100786838 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02181 5 58844342 58848037 Pumo5g02181 5 58844342 58848037 ECH