Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02173 ATGATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCACAAAACCGAGGCCTGTGCTCTCGTGGCAGGTGTTGCTCCGGAGCTTAGCCTTGTCACCGTGCCAGGGAACAACGTTTCTCAATCTCATGGGTCGGGTCATCGGATCCACCAAAACCACCACCTTGGTCTCGTTGCTGCTGTCACCACCTTCGGAACCATTCACAGGAAGAAAAGGATGGCCAGACAAAGAAGATCCACCAACCCAACTTCGTTGATGCACCATCTCAACAGCAACAACCATAGGCTCAAGCCTCGTTCTCTTCCTTCTCCGAGTGCATCCTCCTCGCACGTGCCACTCTCCTCGCTCCCCTCTAATACACCCTCCGCTACTATCCCGCCCGCACGTGAAATCGATCATAGAAGGTTGAGATTCCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCAGCCCTTGAATCAAAAGAAGGAATTGTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCCAACAACAATAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTGTCAACACACATGGCCTACGCTATGGAGATTCCATTATGGTTTACCAAGACAGTGAAAACAACAATTATGTTATTCAGGCCAAAAAGGCTTCTGATCAAGATGAATTTATGGAAGAAACTAGTGACACCATCAATGATATCTTCCTTAATGATTATGAGGTGAACAAACCTGGTTGCTTCAACATAACCTATCCTGCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCTCTTGATTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTAA 984 0.4492 MMMDQRQREKLLHKTEACALVAGVAPELSLVTVPGNNVSQSHGSGHRIHQNHHLGLVAAVTTFGTIHRKKRMARQRRSTNPTSLMHHLNSNNHRLKPRSLPSPSASSSHVPLSSLPSNTPSATIPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRYGDSIMVYQDSENNNYVIQAKKASDQDEFMEETSDTINDIFLNDYEVNKPGCFNITYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02173 327 CDD B3_DNA 137 239 IPR003340 GO:0003677
Pumo5g02173 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 67 247 IPR044800 GO:0003700
Pumo5g02173 327 MobiDBLite consensus disorder prediction 77 124 - -
Pumo5g02173 327 MobiDBLite consensus disorder prediction 67 125 - -
Pumo5g02173 327 Gene3D - 135 253 IPR015300 -
Pumo5g02173 327 Pfam B3 DNA binding domain 139 237 IPR003340 GO:0003677
Pumo5g02173 327 SMART B3_2 139 241 IPR003340 GO:0003677
Pumo5g02173 327 FunFam B3 domain-containing transcription factor FUS3 135 250 - -
Pumo5g02173 327 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Pumo5g02173 327 SUPERFAMILY DNA-binding pseudobarrel domain 137 236 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02173 Pumo-Chr5 58694139 58697436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02173 39 327 B3 DNA Binding Superfamily AT3G26790 50.774 1.18e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo5g02173 B3 9.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02173 K09287 - gmx:100783961 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02173 5 58694139 58697436 Pumo5g02173 5 58694139 58697436 ECH