Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02162 ATGGCAGACCCAACAGCTATCTATGAGTTTTTGAAGCAGCCGTCAAACAGTGGTGGTGCAAAGAGAGCACCGCCACCACCTCCACCACCGTCCTCCGCCGCCGCCGCCGCAGCCGCCACTACCACCCGCACCTTCCAATGCCACTTCTGCAACCGCAAGTTCTTCACCTCTCAAGCCCTCGGCGGCCACCAAAACGCCCACAAGCTGGAGCGCGCCGCCGCAAGGAGATCCACCAACGTCAACGTCGTCCCTTTCCACGCTAACGGGCCTCTGTCTCCACCCCCGCTGCCCCTCGAGCCCATAGAGTCCAAGCCCAGGCCCATGCTCGAACCCACTTCCTCCCCCACCGAGCTTTTTTTCCACCACCACCCTCCCTACTGGCTCGATGTGGTGGAGCCCTTGCAGTTTCAAACCACCCATCACCACCTCACCCCCTCTTTCCCTGTTCCATTCCACGCTGCATCTTCCTCTTCCACTTCCACTACTCCCCAACAACAACAAGCTCTCTCTCACAATGTTGATGCTTCCGACCACGTCAACCTCGACCTCACTCTCCGCTTGTGA 564 0.5957 MADPTAIYEFLKQPSNSGGAKRAPPPPPPPSSAAAAAAATTTRTFQCHFCNRKFFTSQALGGHQNAHKLERAAARRSTNVNVVPFHANGPLSPPPLPLEPIESKPRPMLEPTSSPTELFFHHHPPYWLDVVEPLQFQTTHHHLTPSFPVPFHAASSSSTSTTPQQQQALSHNVDASDHVNLDLTLRL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02162 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Pumo5g02162 187 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Pumo5g02162 187 PANTHER ZINC FINGER PROTEIN JAGGED 19 187 IPR045320 GO:0003700
Pumo5g02162 187 MobiDBLite consensus disorder prediction 152 174 - -
Pumo5g02162 187 MobiDBLite consensus disorder prediction 1 34 - -
Pumo5g02162 187 Gene3D Classic Zinc Finger 33 84 - -
Pumo5g02162 187 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02162 Pumo-Chr5 58537083 58537649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02162 43 80 C2H2 Transcription Factor Family AT5G14010 73.684 1.05e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02162 - - gmx:102659862 210.69