Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02158 ATGGTGGTGTCGACCGGAAAGCTTGCTAGGAGTGGCGGCGACGCCGGTGGCTGGATAAGTCGTCGGAAAAAGGAGGAACAGGGTCGCCGGAGCGACGTCGGCATTAAGAGGGGCGAACTTGAGAGTGTGCACGGTTTGCCAAAAAATTTGATCTTCAGGGACAGTGGGTCCACCGGGCAGGCAAGGTTCTTGAGCACGAAGCCCAATGCGTGTTCACCACAAAAGTATGCCTTTCCATGCTTCTTGAAACGTAAGTTGGAATGCGGCAAACGGCAATGCAAACATATGCTCAATAGACATGGCATTGACGCCTTCAAGGATGATGAAGATCTGAAGAAAGGTGAATCCATATCACCTGAGCTGCGACAAGCCATTAAAGGCTCTCGCATTTACGTTGTGGTCTTCTCAAAGAAATATGCTTCCTCGACTTGGCCACAAGACAAAATGATTGAAGACATTGTTTTATCAATAAGAAATATATTGGGTCCCAATTTTTCAAGTCTTCCAAATAATCATCTAGTTGGAATGAAATCTCGTGTTCAGGAATTAGAAGAGCTTTTATATTTAGGGTCAAAAAATGATGTTCGAGTTGTTGGAATTTGTGGGATGATTGGAATAGGAAAATCAACTGTGGCTCGTGCTTTATACGAAAAAATCTCTCATCAATATGTTTTTAATTGTTTTATTGGTGATGTAAGCAAAATTTATCGAGATTTTAATACATTAGGTGTACAAGAGCAATTACTTTCTCAGTGTTTAAATGAAAAAAATCTAATGATTCACGATGTTTTCCATGGATCAAGTTTGGTATGGAGTACTCTACACCATGCAAGGGCACTTATAGTTTTTGATAATGTTGACCAAGCTGATCAGCTAAAGATGTTTATAGGGAGAGAGACTCAGTTAAATGAATGCCTAGGTAAAGGGAGTAGAATCATCATAATTTCTAGGGATGAACACATATTGAAGACAAATGGAGTAGATGTTGTTTACCAAGTTGAATTGTTGGAAAAAGAAGAAGCAGTTCAGTTGTTTTGCACAAATGCTTTCCAACATAATTATATTAAGAGTGGTTATGAAGAGTTTATAGATGATATACTACAACATGCTGATGGCCATCCCTTAGCACTTAAGTGGAAAAGTGCATTGGCTAAGCTAACAGAACATAAAAGGAAAAATATTATGGATGTGCTGCAAATAGTTTTTGATGACTTGGATGACTTATGCCAAGAAATATTTTTAGATATTGCTTGCTGCTTTGATAGTTATGAAGAGCAACATGTGAAGGAAATTCTAGATTTTCGTAAATTTCATCCTGAATGTGGCCTACAAGATCTCATTCGCAAATCACTCATAACCATTGAAGCCAAAAATCTTGAAGTCATAGTGCTTGACAGGTATAAATATGAGTATCGTGAAACAACATTGAGGGCAGATGCTTTTTCAAAAATGATTCACCTTAAGTTGCTTGTGGTTGATAATTTGCATTGTTCCGGAAGCCTCAACTATCTTTCCAATGAATTAGGATATCTTAGTTGGACAGGATATCCTTTTGAGTGTCTTCCTCCATGTTTTCAGCCAGACAAACTTGTTGAGTTGTGTCTAAGTGGCAACATCAGACAATTATGGGAAGACAAAAAGGTACTATAA 1650 0.3848 MVVSTGKLARSGGDAGGWISRRKKEEQGRRSDVGIKRGELESVHGLPKNLIFRDSGSTGQARFLSTKPNACSPQKYAFPCFLKRKLECGKRQCKHMLNRHGIDAFKDDEDLKKGESISPELRQAIKGSRIYVVVFSKKYASSTWPQDKMIEDIVLSIRNILGPNFSSLPNNHLVGMKSRVQELEELLYLGSKNDVRVVGICGMIGIGKSTVARALYEKISHQYVFNCFIGDVSKIYRDFNTLGVQEQLLSQCLNEKNLMIHDVFHGSSLVWSTLHHARALIVFDNVDQADQLKMFIGRETQLNECLGKGSRIIIISRDEHILKTNGVDVVYQVELLEKEEAVQLFCTNAFQHNYIKSGYEEFIDDILQHADGHPLALKWKSALAKLTEHKRKNIMDVLQIVFDDLDDLCQEIFLDIACCFDSYEEQHVKEILDFRKFHPECGLQDLIRKSLITIEAKNLEVIVLDRYKYEYRETTLRADAFSKMIHLKLLVVDNLHCSGSLNYLSNELGYLSWTGYPFECLPPCFQPDKLVELCLSGNIRQLWEDKKVL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02158 549 ProSiteProfiles TIR domain profile. 73 219 IPR000157 GO:0007165
Pumo5g02158 549 PRINTS Disease resistance protein signature 197 212 - -
Pumo5g02158 549 PRINTS Disease resistance protein signature 273 287 - -
Pumo5g02158 549 PRINTS Disease resistance protein signature 370 384 - -
Pumo5g02158 549 Gene3D - 335 406 IPR042197 -
Pumo5g02158 549 SUPERFAMILY Toll/Interleukin receptor TIR domain 91 150 IPR035897 -
Pumo5g02158 549 Pfam TIR domain 97 144 IPR000157 GO:0007165
Pumo5g02158 549 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 94 542 IPR044974 GO:0006952
Pumo5g02158 549 MobiDBLite consensus disorder prediction 17 32 - -
Pumo5g02158 549 MobiDBLite consensus disorder prediction 1 32 - -
Pumo5g02158 549 Pfam NB-ARC domain 181 399 IPR002182 GO:0043531
Pumo5g02158 549 Gene3D - 164 332 IPR027417 -
Pumo5g02158 549 Gene3D - 87 159 IPR035897 -
Pumo5g02158 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 416 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02158 Pumo-Chr5 58388427 58394078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02158 139 548 WRKY Transcription Factor Family AT4G12020 28.151 4.45e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02158 - - gmx:100790778 422.165