Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02155 ATGTTGCCCTGCGATTACTGCGACTCCAAACCCGCCTTACTCTTCTGCAGAGCAGATTCGGCCAAACTGTGTTTAGTCTGTGACCAGCACGTGCACGCCGCCAACGCTCTCTCCCTCAAGCACGTGCGCTACCAGATTTGCGACACCTGCAAGAGCGACACCGCCGCTGTCCGCTGCTCCACCGACAACCTCGCCCTCTGCCACCACTGCGACGTCGACACCCACGGCACCTCCGCTGCCTCCTCCCTCCACCACCGCCACCGACTCCACGGCCTCTCCGGCTGCCCCACCGTCCCCGAGATTGCCTCCGCGCTGGGCCTCGATTTCCGGTCCAATAACCCGGCCCAGGAGCCCGTGGTCCCCACCGCCAGCACCGGCAAGTTCCGCCACGAGGTGTACGAGCAGGTCCTCGAAATCGCGCGCAAGAGGAACGGGCTCGGCGCCGCCACCACCGAGAACGTTGTTGAACTCGAGTTCGACTCAGGAAACGACGTCGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTCTGCTCATGTTTCCCAATTCTGAATCTGAATTTGACGCTAGAAAAAGTAACGATAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAATAATCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGATTGCAGTGAACCAAGAGTGGTGACATATGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTGCACAATATGAATTACTCGACAATTGGTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGATAGCAACAAGAAAGCTAGAGGTGGGTTATCATCAGAGTCCAAATTGTTTGAATCCATACCGTACAGTGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTGGGTGGGAATGAAAATGTTAGCACCTTAAAAGCCAGGGTTAGCTTGGAAGAGTTGGCCAAGAATAGAGGTGATGCCATGTTACGCTATAAGGAGAAGAAGAAAAGTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCGAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA 1161 0.5194 MLPCDYCDSKPALLFCRADSAKLCLVCDQHVHAANALSLKHVRYQICDTCKSDTAAVRCSTDNLALCHHCDVDTHGTSAASSLHHRHRLHGLSGCPTVPEIASALGLDFRSNNPAQEPVVPTASTGKFRHEVYEQVLEIARKRNGLGAATTENVVELEFDSGNDVVDEMLMQQTPFTSLLMFPNSESEFDARKSNDNGYGTEAGDLLWNYNNPAYQPPQVWDFQLQKSRDCSEPRVVTYDGLEVPKSFQDVHNMNYSTIGDDILSRNNQSDQSSSSHAKKKEDSNKKARGGLSSESKLFESIPYSGTNNVVVMEHLVGGNENVSTLKARVSLEELAKNRGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02155 386 MobiDBLite consensus disorder prediction 260 292 - -
Pumo5g02155 386 CDD Bbox1_BBX-like 3 46 - -
Pumo5g02155 386 Pfam CCT motif 339 381 IPR010402 GO:0005515
Pumo5g02155 386 MobiDBLite consensus disorder prediction 260 274 - -
Pumo5g02155 386 ProSiteProfiles CCT domain profile. 339 381 IPR010402 GO:0005515
Pumo5g02155 386 ProSiteProfiles Zinc finger B-box type profile. 42 92 IPR000315 GO:0008270
Pumo5g02155 386 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 382 - -
Pumo5g02155 386 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Pumo5g02155 386 MobiDBLite consensus disorder prediction 275 290 - -
Pumo5g02155 386 SMART bboxneu5 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02155 Pumo-Chr5 58320359 58324037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02155 1 383 C2C2-CO-like Transcription Factor Family AT2G33500 36.817 4.77e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo5g02155 CCT 1.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02155 - - gmx:100786838 634.024