Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02146 ATGGCGAGCAGGTACTGGGCAGTGTCTCTTCCCGTCCCCAATTCCGCATCTCAGCTCTGGAACCAATTGCAGGAACGAATCTCCAAACATTCCTTCGACACACCTCTCTACAGATTCAACATCCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTCAGCGATGACCTCGCCAAGTCCAACAATTTCGTGGAAGGAGTCACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCGTCGACGGCGGTGGCTTCACCGTCGATGGCGTCCCCGTCGATTCCTATTTGACCAGGTTCGTTTGGGATGAGGCCAAGTACCCCACTATGTCGCCTTTGAAGGAGATCGTCGATGGTATTCATAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCCGAGGACATTATAACTTCAGAACATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCGAGCTACGAAACATTGACAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTATGAAGATAACGAATATGCTCTTTATACTGTCACACTCTTCAATCGTGTTGCGGATAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGCGACTTTGAATTCAGTCCCGAAACACATGAGAACCGAAAGCAGGAGTTAGATAAATTGATGCAAGATCAGGAAAGATTGAAGTCTTCTCTGTTGCAATGGTGCTATACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTCTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTTTAGCTCCTTCTGTAAAATCTGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGTACAAACAGTGCATATTGGAAGACCGAGGATGAAGTAGGTGCTGTGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCCTATGTTTCTTTCACTATCAATCTTGCTTGA 1131 0.4642 MASRYWAVSLPVPNSASQLWNQLQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGVDGGGFTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEFSPETHENRKQELDKLMQDQERLKSSLLQWCYTSYGEVFSSWMHFSAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSTNSAYWKTEDEVGAVMAGLAGDADAHPYVSFTINLA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02146 376 Gene3D - 41 312 - -
Pumo5g02146 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pumo5g02146 376 Gene3D - 163 251 - -
Pumo5g02146 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pumo5g02146 376 FunFam V-type proton ATPase subunit C 163 251 - -
Pumo5g02146 376 Coils Coil 257 277 - -
Pumo5g02146 376 Gene3D Vacuolar atp synthase subunit c; domain 1 10 334 - -
Pumo5g02146 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Pumo5g02146 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02146 Pumo-Chr5 58149881 58155304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02146 1 376 Primary Pumps ATPases(2) AT1G12840 82.713 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02146 K02148 - gmx:100780187 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02146 5 58149881 58155304 Pumo5g02146 5 58149881 58155304 ECH