Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02138 ATGAGCCTCGGGGATTTCGAGGAGTTCAAGTCTTCTTCCACTGTATTGAATGCTTCGAATGCTTCAAGAGATGGTAGTCAGAGAGGGCGTGGCATAAGTACCAGCATCAGTTCATACAACATAGTACAAGGGAAAGAACCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCAAAGTCATAAGAAACTTCTCCCCTTCTTTCAAGATTGGCAAAGTTGGTTTTGGTGCTGCCTACAAGGCCAAACTCCTGGATGGGACTGTTGTTGCAGTAAAGCGTGCTAAGAAGAGTGTGTATGAGAAACATTTGGGGGTGGAGTTCCAGAGCGAGATACAAACACTATCACGGGTGGAACATTTGAACTTGGTCAAGTTCTTTGGATATTTGGAGCAAGAAGATGAAAGAATCATTGTTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAGCATTTAGATTGCATTCATGGAAGCGTTCTGGACCTTGCTGCACGTCTAGATATAGCAATTGATGTTTCTCATGCCATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTCACTGAAAATTTTCGAGCCAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCCCCTGACAGTGACTCTGGCATGACACATGTTTCCACCCAAGAAAAAGGAACAGCTGGCTACTTGGACCCTGAATACCTCAAAACTTATCAACTAACTGAAAAGAGTGACGTGTATTCATTTGGAGTTTTGCCTGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAGGGAGTCAATCACAGCAAAATGGGCTATGAAGAGGTTCATTGAGGGAGATGCTATCTCAGTCTTGGACCCAAGACTGGATCAGACTGCTGCAAACACTTTGGCACTAGAAAAGATTCTTGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAGTAGGCCCATCTATGAAGAGATGTGCTGA 1011 0.4303 MSLGDFEEFKSSSTVLNASNASRDGSQRGRGISTSISSYNIVQGKEPGIVKFTMEEIFKVIRNFSPSFKIGKVGFGAAYKAKLLDGTVVAVKRAKKSVYEKHLGVEFQSEIQTLSRVEHLNLVKFFGYLEQEDERIIVVEYVPNGTLREHLDCIHGSVLDLAARLDIAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAPDSDSGMTHVSTQEKGTAGYLDPEYLKTYQLTEKSDVYSFGVLPVELVTGRRPIEPKFELRESITAKWAMKRFIEGDAISVLDPRLDQTAANTLALEKILELALQCLAPRRQSRPIYEEMC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02138 336 Pfam Protein kinase domain 69 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02138 336 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02138 336 Gene3D Transferase(Phosphotransferase) domain 1 142 336 - -
Pumo5g02138 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Pumo5g02138 336 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 25 141 - -
Pumo5g02138 336 SUPERFAMILY Protein kinase-like (PK-like) 40 334 IPR011009 -
Pumo5g02138 336 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 142 336 - -
Pumo5g02138 336 PANTHER OS01G0750732 PROTEIN 29 331 - -
Pumo5g02138 336 Gene3D Phosphorylase Kinase; domain 1 27 141 - -
Pumo5g02138 336 ProSiteProfiles Protein kinase domain profile. 64 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02138 Pumo-Chr5 58040633 58056054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02138 48 335 Receptor kinase-like Gene Family AT1G79620 44.178 1.21e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Pumo5g02138 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02138 - - gmx:100305435 585.489