Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02131 ATGAATATGGAGCGCTACACGCTACCCGCACCACCCAATATTCCCGAGGAAGACGCGGCACCGTCGTGGGCCAGGCCCAATTCGGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACAACAACCTCAACCTGATTCTTACTTCAACTTTAACTTCAACTCTTCAATTAGTACTACTACTCTCCCTTTTGTTCCTAACATGGACTCTTTCCCCTCTCTTGACCCTTTCTCACCTTCACTTTCACTTCCTCTCTTCAACAACAACAACAACATGGGTTTCGACCCGGGTTTTGACTTAGGCCTGGACACTGGGCTTCACTCTGCTGCTCCCCAGCTTTTTTCCCAGGCCCAGATGGGCGGCTTCGAGTTCTCGGAACTCGAAGCCCTTGCTGGACCTGGGAATGCTGTCCCGTTTGCGGACGGGGCAAAGGCGGCTGCGAGGCCTCTTGAGGCCTCGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAGATTCCGGGGCTGGAGATGGTGAGGAGGAAGGGTAGGAAGTGGGAGGAAGGAGGGGAGGGTGAGGAAGGTAGCAGTGCTGACGTGGATGGTTCCGGGCTGAATTACGAGTCTGATGAGCAGAACGAGGATAATGTTTTGAAGGGGAGTGAGAATAATGGTGGAGATCACAAGGGGAAGAGGAAGGGGCTGCCCGCCAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGAGGATTAACGATCTTCATAACGAGCTGGAGTCAACTCCACCCGGCTCGTCGCTGACACCTTCTTCTACAAGCTTTCAGCCTTTAACACCCACTATGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAGGCTGCGAAGGTTGAAGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATAAAAGCGGTGCTCTTGGATTCTGTGGGCTTCCATGTTTGTAAATGCATTGCTTCTTCTTCTCCTTTGAAAAGGCCTTCCTCTTTAGGCCCAGATCAATTAGGTTAG 1356 0.5162 MNMERYTLPAPPNIPEEDAAPSWARPNSEEENIAIAMGAPLIPSFKSMLQQQPQPDSYFNFNFNSSISTTTLPFVPNMDSFPSLDPFSPSLSLPLFNNNNNMGFDPGFDLGLDTGLHSAAPQLFSQAQMGGFEFSELEALAGPGNAVPFADGAKAAARPLEASQPTLYRKRRGTAAEIPGLEMVRRKGRKWEEGGEGEEGSSADVDGSGLNYESDEQNEDNVLKGSENNGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSSLTPSSTSFQPLTPTMPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSVGFHVCKCIASSSPLKRPSSLGPDQLG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02131 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Pumo5g02131 451 Coils Coil 282 302 - -
Pumo5g02131 451 MobiDBLite consensus disorder prediction 1 29 - -
Pumo5g02131 451 Gene3D - 233 302 IPR036638 GO:0046983
Pumo5g02131 451 MobiDBLite consensus disorder prediction 187 244 - -
Pumo5g02131 451 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 122 427 - -
Pumo5g02131 451 FunFam BHLH transcription factor 235 303 - -
Pumo5g02131 451 MobiDBLite consensus disorder prediction 217 244 - -
Pumo5g02131 451 SMART finulus 245 294 IPR011598 GO:0046983
Pumo5g02131 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 308 IPR036638 GO:0046983
Pumo5g02131 451 Pfam Helix-loop-helix DNA-binding domain 246 288 IPR011598 GO:0046983
Pumo5g02131 451 CDD ACT_UUR-ACR-like 360 401 - -
Pumo5g02131 451 CDD bHLH_AtAMS_like 242 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02131 Pumo-Chr5 57932302 57936393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02131 130 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 66.197 1.75e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02131 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02131 - - gmx:100804797 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02131 5 57932302 57936393 Pumo5g02131 5 57932302 57936393 ECH