Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02123 ATGTCCATCTTGCCCTCACAGACCCAAGCCGCATCTTCGTCTTCTTCGTCTGCGCCATCTCACAACCCTAATCCCCAACATGGAATTGGAATCCCTATTCCCCAACCCTTATCTTCTCTTCCCCCCTCAATCAACCTCGCTTTCGGATCTGTCCAGATCTCCGATAACCCAGGTTCATCGACTTCAGCTGCTCAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGTGATGGTTTCACCTATGCAAAACTCTAGAACACGTTCCAGGAGTCAAGGGGGAAGACGGACCGGAACCGGAACGGGAACAGGAACAGTTTCTTATTATAGAAATCAACAAACTCCTGGGTTTGTCAATTCTTATGGAAGTGCCCCTTCGGCAGGGAGAAAAGCTCAGATGGTGAACGGGAATTACTTGCTGAATTTTCAATATGACCCGATATCCCGTTCTCAACCACGGGGTCCTCCTCCTCCCCCTACAACAAGAAGGCATCGGAAGAGGAAACCGTACAACAAAGATTTGTTTTTGCAGGCGAATTACAAGTTCATGGTGCTAGATTCGGGAAATTATTTGCCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACCCCCTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCATGTGTCCGCAGATAACCTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACGGTGCACATCACAAATGTCAAACAGTATCGAGTTGGAGATAATGTTGAGTTCACCTTTTTAACGCGGAAAAAGGATTCCTTTACTCTGTCTCATAAAAATAAACAAGAGACAAATATCTGTGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCAGTGAGACATGCAATATCCGATCTAGATGGTTGGTTAGCCAGAGCTGATTCAGGTCTTGTTCATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCACAGGTCTCATGACAGTGAAGAATCTTCTAAGCTTATTGATTACGGACATCAGATACCATCAACAGTTGCAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTTCTGATTTCCTTGATCAAAATAAGGTTATGATGTTGGATAAGTCGACTGCTGGAGCCTGTTCGGATCAAAACTTGGATGTTGAGAAAGAATTAATAGAGCAGGAAATGAATTTATCTTCTTCATATGAGGAGAAAAACGATATTCAAAGGCATTCAGATGGTGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCCTGAGTCATTTTCCATTAACCACAATCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAACTTGCAAAAAAGGAACGGAAGGAAAAAATAAAGGCTGAAGCTACTGCTGCTTATTCTCTTCCCATATCATTAAGTTCTCAGTTTACTTCTCGTGATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAACTGTATCAAGTCCTCCCCTAGCTGGGGAGAGAAAATCGTTCTCAAATGTTACTAGGCTCGGGTTTGCTGCTGCTCACGATTCTCCATCCTTACAAATTCAAGAAACTAGTGGTCTACATAATAACAACACGACCACTGATTCTTCTGTCACAACAGGTTTGAGAAATGGGGAGACACAATCATACTCCAATGTTATATCAAGAGCAGAATCTAATATGAGCTCGAATGCACCAAAGACAAGTGAGTTGGGGAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGTAGGCGTTATTGA 2220 0.4248 MSILPSQTQAASSSSSSAPSHNPNPQHGIGIPIPQPLSSLPPSINLAFGSVQISDNPGSSTSAAQDSGGSSEKVTELGSPSGVMVSPMQNSRTRSRSQGGRRTGTGTGTGTVSYYRNQQTPGFVNSYGSAPSAGRKAQMVNGNYLLNFQYDPISRSQPRGPPPPPTTRRHRKRKPYNKDLFLQANYKFMVLDSGNYLPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPMCPQITSCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFVMISAKDLYTVHITNVKQYRVGDNVEFTFLTRKKDSFTLSHKNKQETNICDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVHDLEKLPYVCAAMQQLEQRKRYWSEHRSHDSEESSKLIDYGHQIPSTVANSMDTDDENCSNGSRTSSSDFLDQNKVMMLDKSTAGACSDQNLDVEKELIEQEMNLSSSYEEKNDIQRHSDGVVGDVKENDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTIFQLCEVDLSEMLPPEALAPFMDEIKKRANQRKQLAKKERKEKIKAEATAAYSLPISLSSQFTSRDDPPTFSMDDFEALGNSTVSSPPLAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNTTTDSSVTTGLRNGETQSYSNVISRAESNMSSNAPKTSELGKKGKKPNRVLLSTAGGRRY 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02123 739 MobiDBLite consensus disorder prediction 40 127 - -
Pumo5g02123 739 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Pumo5g02123 739 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Pumo5g02123 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 303 IPR013083 -
Pumo5g02123 739 PANTHER RING FINGER 10 FAMILY MEMBER 54 739 IPR039739 -
Pumo5g02123 739 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Pumo5g02123 739 CDD RING-HC_RNF10 223 280 - -
Pumo5g02123 739 MobiDBLite consensus disorder prediction 406 426 - -
Pumo5g02123 739 MobiDBLite consensus disorder prediction 1 24 - -
Pumo5g02123 739 SUPERFAMILY RING/U-box 224 278 - -
Pumo5g02123 739 MobiDBLite consensus disorder prediction 671 717 - -
Pumo5g02123 739 Coils Coil 576 600 - -
Pumo5g02123 739 MobiDBLite consensus disorder prediction 1 132 - -
Pumo5g02123 739 MobiDBLite consensus disorder prediction 671 739 - -
Pumo5g02123 739 MobiDBLite consensus disorder prediction 151 174 - -
Pumo5g02123 739 SMART ring_2 225 271 IPR001841 -
Pumo5g02123 739 FunFam RING finger protein 10 218 286 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02123 134 689 C3H Transcription Factor Family AT3G26730 56.379 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02123 K26979 - gmx:100798764 1219.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02123 5 57818790 57826709 Pumo5g02123 5 57818790 57826709 ECH