Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02115 ATGGTTGTGCAGGCTCTGGACGTTGTTCATCAGCACTTAATGGTTTCTACCAGGGCGGAGAAGAGTTCGGAATCCAAAGTCGCCGTGGCGAATGGCGGAAATGGAGCTAAGGCTGAGAAGAAATCGAGAGAATCGAAGGGTTCGGCAATGCCGCGGAGGTCGAGTGCTCGGATTCAGGCGTTGCAGAAAGCGGAGGAGGAGCTTCTTGCTCGGCAAAAAGCGGAGCTGGAGCTAGTTGAGGAGAAAGACAATTGTGATGACGAGGTGACGACAGCGAATGCGAAGAAGCGCAATAGAAAGAGTGACTGTGAGGAGAGTGTGGTAATGGAAGAAGAGGTTGTTTTGCAGCCGAAGAAAAAGCCGGTGGCCTACCGCAGGGGTAAGGTGGAACATGTGAATGGCAAGGTTAAGGTGGATGAAGTGAATGGGAAGGAGGAATCAGAAAATGCGGGTGGGGGTTTGGGGGAGAAGAGTGACTTGCATAAGGTCAAAGAGACTATAAGACTGTTTAATAAACATTACCTTCAATTAGTTCAGGAAGAAGAAAAGAGGTGTGGGAGGGCAGAGGCTGAGCGGAAAGCTGCTAAAAAGGGTTCTAAAAAGGGTTCTAAAAAGGCTTCAAAATTGAAGAAAGGTGCTCCACCTGAAGAATCAAAGACCACTGCTAAACGACCAGATCTAAAAGCCATAAGCAAGATGATGGAAAATAATGAGATATTGTACCCTGGGAAAAGAATTGGCAACATTCCAGGTATTGAGGTTGGATATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAATGGCATTGATTATATGGGCCAGTCCTATGCCAAAGTGTACAGCTATGAATTTCCAGTTGCTGTTGCCATTGTTTTGTCGGGCATGTATGAGGATGACCTGGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACTGGTGATAAGCGTCAAATCCGGGATCAAAAGTTGGAGCGTGGTAACCTGGCTCTCAAGAATTGTGCCGAGCAATGTGTGCCTGTTAGAGTCATTCGTGGTCATGAATCTTCAAGCAGTTACACTGGTAAAGTATACACATATGATGGCTTGTACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCTGGATTTACAGTCTACAAGTTTAGACTTAGGAGGCTTGAAGGGCAACCTACATTAACCACAAACCAGGTATATTTTACTCATGGACGTGTACCTCAATCTTTAACAGAAATACGAGGATTGGTTTGTGAGGATATCACTGGAGGTCAAGAAGATATGCCCATTCCGGCTACAAATTTGGTTGATGATCCCCCTGTTCCACCCTCAGGTTTCACATATTGTAAGTCTCTAAAGGTTGCAAAAAATGTGAAGCTTCCCATGAATGCCACCGGATGCAAATGCAAAGGCATTTGTAATGACCCAACAACCTGTGCATGTGCATTGCGTAATGGCTCTGATTTTCCGTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCAAAAGATATAGTATTTGAATGTGGTCCCCAATGTGGTTGTGGTCCAGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTCTGGAGGTTTTCCGTACTGCAAAAAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCTGGAGCACTGGTTTGTGAGTACACAGGAATACTTGCTAGGACAGAAGATATGGATAGCGTATTGGAAAACAATTACATTTTTGAGATAGATTGCTTGCAAACGATCAAGGGTCTTGGGGGAAGAGAGCGGCGGTCACAAGACGGAGAGATTCCTGCAAATCTTTTGGACAAATATGATGATCAAAGTTCTGAAAGTGCGTCAGAGTTTTGTATCGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACACGATGATTTGAGATTGGCTCGTGTAATGCTGTTTGCTGCTGACAACATACCCCCTTTGCAGGAATTAACATATGACTATGGTTATGCGCTTGATAGCGTCTTGGACTCCGATGGGAAGATCAAGCAAATGCCATGCTATTGTGGAGCCTCAGACTGCCGGAAGCGATTATTCTGA 2166 0.4464 MVVQALDVVHQHLMVSTRAEKSSESKVAVANGGNGAKAEKKSRESKGSAMPRRSSARIQALQKAEEELLARQKAELELVEEKDNCDDEVTTANAKKRNRKSDCEESVVMEEEVVLQPKKKPVAYRRGKVEHVNGKVKVDEVNGKEESENAGGGLGEKSDLHKVKETIRLFNKHYLQLVQEEEKRCGRAEAERKAAKKGSKKGSKKASKLKKGAPPEESKTTAKRPDLKAISKMMENNEILYPGKRIGNIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKVYSYEFPVAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCAEQCVPVRVIRGHESSSSYTGKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRLEGQPTLTTNQVYFTHGRVPQSLTEIRGLVCEDITGGQEDMPIPATNLVDDPPVPPSGFTYCKSLKVAKNVKLPMNATGCKCKGICNDPTTCACALRNGSDFPYVSRDGGRLVEAKDIVFECGPQCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRSWDFIPSGALVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQDGEIPANLLDKYDDQSSESASEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQMPCYCGASDCRKRLF 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02115 721 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 35 715 - -
Pumo5g02115 721 MobiDBLite consensus disorder prediction 189 225 - -
Pumo5g02115 721 MobiDBLite consensus disorder prediction 18 59 - -
Pumo5g02115 721 ProSiteProfiles SET domain profile. 542 691 IPR001214 GO:0005515
Pumo5g02115 721 Gene3D SET domain 423 721 IPR046341 -
Pumo5g02115 721 SUPERFAMILY SET domain 426 697 IPR046341 -
Pumo5g02115 721 SUPERFAMILY PUA domain-like 229 419 IPR015947 -
Pumo5g02115 721 Coils Coil 62 84 - -
Pumo5g02115 721 Pfam SET domain 553 691 IPR001214 GO:0005515
Pumo5g02115 721 ProSiteProfiles Post-SET domain profile. 705 721 IPR003616 -
Pumo5g02115 721 SMART preset_2 430 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g02115 721 Pfam SAD/SRA domain 246 403 IPR003105 -
Pumo5g02115 721 SMART set_7 542 697 IPR001214 GO:0005515
Pumo5g02115 721 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 9 721 IPR025794 GO:0016571
Pumo5g02115 721 MobiDBLite consensus disorder prediction 209 225 - -
Pumo5g02115 721 SMART G9a_1 242 403 IPR003105 -
Pumo5g02115 721 Coils Coil 171 198 - -
Pumo5g02115 721 Gene3D - 230 416 IPR036987 -
Pumo5g02115 721 ProSiteProfiles Pre-SET domain profile. 477 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g02115 721 SMART PostSET_3 705 721 IPR003616 -
Pumo5g02115 721 MobiDBLite consensus disorder prediction 136 157 - -
Pumo5g02115 721 ProSiteProfiles YDG domain profile. 247 399 IPR003105 -
Pumo5g02115 721 Pfam Pre-SET motif 434 534 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02115 Pumo-Chr5 57677232 57694783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02115 233 721 EF-hand Containing Proteins AT5G13960 67.748 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo5g02115 SAD_SRA 5.9e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02115 K11420 - gmx:100795584 1217.6