Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02108 ATGAAGGCATATATAGCTGCAAGTTCACCATCAAGCTTACTCAGAGAGAAAAGAGAAATAAGACTAGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCGAAGGCATGGAAAGAGACCTCTCCCTTCTGATCATGCATCAAGGGAGAAAAGGGAAGGTTTCAACTTTTCTGTTCACAAATCTCCACCTAAGAGCCAAGGGGAAGAAGCTTCTCAATTCTCCTTTATACATCCAATCAATACTGGTGATGATAGCACCCTTTCTACACCAATACCACAATATGGGCAAATTAGCGATTCTTGCTTGATTGAGACTCAGGACCCATCCCAGCAGCCTTTAAATCAAGGCAATGCGAGAAAAAGACACTATAGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGATCCAAAGCCAAGCTCAATTTCCCAGAACACGTTATTGTTGCTCCATTGTCATCACCACCTTGTAATAATAATAATCAAAATAATCATAATAGTTATTATGGTTCTTCAGCTCTTGCACCTCATGCACCACCACCACCACCGCCACTACCATTGTTACCACATGTTTATCAACCACAACAACCATCAGAAGAAGGGTTTCCCAATCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGATGATCTGCAACGTGTTGCTTCAGGCCTTCATCAACATCATCATCCTCATCATATGCATCATCATCATCATCATCATCGTCCCAATGAGCCTTTTTGTGATTCAAGTTCCTCAGCTTTGTTCTCATCATCGTCCACTTCTGTGTCTGATCAACAGCAGAATATTGGAGATGACACGAGTGCTCCCAGGGGGGGAGAGTATTATGGTTCTTGCTTTTTTAGAGGGAGTGATTTTCATGGCAAGAATTGA 1005 0.4388 MKAYIAASSPSSLLREKREIRLEEPFIELNKVDRRHGKRPLPSDHASREKREGFNFSVHKSPPKSQGEEASQFSFIHPINTGDDSTLSTPIPQYGQISDSCLIETQDPSQQPLNQGNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVIVAPLSSPPCNNNNQNNHNSYYGSSALAPHAPPPPPPLPLLPHVYQPQQPSEEGFPNLMQYAQLLWSRDDDDLQRVASGLHQHHHPHHMHHHHHHHRPNEPFCDSSSSALFSSSSTSVSDQQQNIGDDTSAPRGGEYYGSCFFRGSDFHGKN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02108 334 PANTHER DNA-BINDING DOMAIN 85 275 IPR044808 GO:0003700|GO:0009873
Pumo5g02108 334 MobiDBLite consensus disorder prediction 210 226 - -
Pumo5g02108 334 MobiDBLite consensus disorder prediction 30 57 - -
Pumo5g02108 334 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Pumo5g02108 334 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Pumo5g02108 334 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Pumo5g02108 334 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Pumo5g02108 334 MobiDBLite consensus disorder prediction 263 315 - -
Pumo5g02108 334 MobiDBLite consensus disorder prediction 30 71 - -
Pumo5g02108 334 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Pumo5g02108 334 MobiDBLite consensus disorder prediction 189 206 - -
Pumo5g02108 334 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Pumo5g02108 334 MobiDBLite consensus disorder prediction 263 279 - -
Pumo5g02108 334 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Pumo5g02108 334 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Pumo5g02108 334 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Pumo5g02108 334 MobiDBLite consensus disorder prediction 284 311 - -
Pumo5g02108 334 MobiDBLite consensus disorder prediction 189 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02108 Pumo-Chr5 57582173 57583853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02108 106 204 AP2-EREBP Transcription Factor Family AT5G61890 64.545 4.64e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02108 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02108 - - gmx:106797385 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02108 5 57582173 57583853 Pumo10g01816 10 23872349 23874904 ECH
Pumo5g02108 5 57582173 57583853 Pumo5g02108 5 57582173 57583853 ECH
Pumo6g00578 6 7338894 7343231 Pumo5g02108 5 57582173 57583853 ECH
Pumo10g01816 10 23872349 23874904 Pumo5g02108 5 57582173 57583853 ECH
Pumo5g02108 5 57582173 57583853 Pumo6g02351 6 46399486 46402475 PCT
Pumo6g02112 6 38202348 38204615 Pumo5g02108 5 57582173 57583853 PCT