LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g02090	ATGGTTCTTCAAAATGATATTGATTTGCTAAACCCTCCGGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTTAAGTGCCAAGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAGACTGTTGTTGTATGCGGAAACTGCCAGACCGTCTTGTGCCAGCCGACAGGCGGCCGGGCAAGGCTAACCGAGGGATGCTCCTTTAGGAAGAAGGGAGACTGA	261	0.4866	MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD	86

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g02090	86	FunFam	40S ribosomal protein S27	1	86	-	-
	Pumo5g02090	86	Hamap	30S ribosomal protein S27e [rps27e].	24	84	IPR000592	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g02090	86	Pfam	Ribosomal protein S27	30	84	IPR000592	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g02090	86	ProSitePatterns	Ribosomal protein S27e signature.	38	70	IPR000592	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g02090	86	Gene3D	-	5	85	IPR023407	-
	Pumo5g02090	86	PANTHER	40S RIBOSOMAL PROTEIN S27	1	86	IPR000592	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g02090	86	SUPERFAMILY	Zn-binding ribosomal proteins	30	84	IPR011332	GO:0006412

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g02090	Pumo-Chr5	57373599	57374720	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g02090	1	86	Cytoplasmic Ribosomal Protein Gene Family	AT3G61110	95.349	8.03e-60	175

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g02090	K02978		-	gmx:100499804	177.178

Showing 1 to 1 of 1 entries