Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02087 ATGAACCCGCGCACGACGTCGTCGAAGGCGAAGAAGAAGCAAACGACAACGACACAGGAGGCGCACCAAACGGCATGGGGAGGGAGGTACCTCGGCGTGCGGCGAAGGCCGTGGGGGAGATACGCGGCGGAGATTCGCGATCCTTCCACGAAGGAGAGACATTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCACTCGCCTACGACAGAGCCGCACGTGCCATGCGCGGCTCACGTGCCCGCACTAACTTCGTCTACGCTGACACCACCCCTGGCTCTTCCATCACTCCTATCATTTCCCCCGACCAACAACAACCCCTCCTTCAACCCGACCCGATTCTCACACTCGACCCGTTTTCCCTCCTGGGCTTCCCCTCCGGTTCTTCTTCCTACGGTTATGTCGATGAACATGCTTCCGCTTCTGTTTCTGCCAGCCTGGCAGGTTCGCAGTTTAGCCAACAAGTGTTTTTTGACAATAATAATAATAATAATAATAATAATAATAATGATGATGGTAGTGGTAGCACGATAGAGCTTCCTCCGTTGCCACCGGATATTACTAGCTCCATCGGTTATGAAGGATTTTATGATAATAATGATAATAATAATGGAGGGTATTATTGGGAGAACAATGCGGATGAGGATAATTACTTGGATAGTTCAATGTTTAGCACAATGCCAACAGTGTCGTCAGAGAATGTGGCTGGGTCTCAAGTTTTTGATTTCGGAAACTCCTCATCCTATTTCTTCTGA 756 0.5079 MNPRTTSSKAKKKQTTTTQEAHQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARAMRGSRARTNFVYADTTPGSSITPIISPDQQQPLLQPDPILTLDPFSLLGFPSGSSSYGYVDEHASASVSASLAGSQFSQQVFFDNNNNNNNNNNNDDGSGSTIELPPLPPDITSSIGYEGFYDNNDNNNGGYYWENNADEDNYLDSSMFSTMPTVSSENVAGSQVFDFGNSSSYFF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02087 251 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pumo5g02087 251 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Pumo5g02087 251 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 160 - -
Pumo5g02087 251 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Pumo5g02087 251 MobiDBLite consensus disorder prediction 157 176 - -
Pumo5g02087 251 MobiDBLite consensus disorder prediction 1 24 - -
Pumo5g02087 251 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Pumo5g02087 251 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pumo5g02087 251 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pumo5g02087 251 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pumo5g02087 251 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Pumo5g02087 251 MobiDBLite consensus disorder prediction 157 182 - -
Pumo5g02087 251 MobiDBLite consensus disorder prediction 1 25 - -
Pumo5g02087 251 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02087 Pumo-Chr5 57283875 57284717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02087 5 231 AP2-EREBP Transcription Factor Family AT5G13910 44.492 1.47e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo5g02087 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02087 K09286 - gmx:100792421 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02087 5 57283875 57284717 Pumo5g02087 5 57283875 57284717 ECH
Pumo5g02087 5 57283875 57284717 Pumo6g02134 6 38860810 38861733 PCT