Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02080 ATGAGTTTTCAAGACATCCAAGGTGGGCCCCACCCTCCCTCTCGCCGGAGCCAGTCCCCGTCGCAGGCCGTCGCTGCCGGAATTTTCCAGATCAACACCGCCGTCGCTACTTTCCGGCGACTCGTCGATGGCGTTGGAACCGTTAAAGACACTCCCGAACACCGCCAGAAGCTGCACAATACGAGGCAGAGAATTTTGCAGCTGGTGAAGGATACTTCTGCTAAGCTCAAATTCTTGACTGAATCTGATCGTGATGCTAATGCCAATGCTAGTAAGAAAATTGAGGATGCTAAGCTTGCAAGAGATTTCCAAACCACATTGCAAGAGTTCCAGAAAGTACAACAGCTTGCTTCGGAGCGCGAATCGACTTACACCCCTGCTGCCCCTTCTTCTTCTTCTCTACCAACAAGCTCTGGCTCTGGTGAAGAATCAGTTGGGATAGAAGTGGAAAGCCAACCTTTTATCAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAATGAAATATCCTTCAACGAGGCCATGATTGAAGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGATCAGGGTGTTGTTATTGATGACATTCAATCAAATGTTGATGCTTCTGCTGGTGCAACAATCCAAGCTAGGGTTCAGCTAGCCAAGGCTTCCAAAAGTGTGAAATCCAGAACCTCGTGGTGTTGGTGGGTGCTTGCAATTTTTGTGGTCGTGCTGGTGATCTTACTTGTTGTACTCATTCTTTAG 804 0.4701 MSFQDIQGGPHPPSRRSQSPSQAVAAGIFQINTAVATFRRLVDGVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKFLTESDRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPAAPSSSSLPTSSGSGEESVGIEVESQPFIREQKRQEILLLDNEISFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNVDASAGATIQARVQLAKASKSVKSRTSWCWWVLAIFVVVLVILLVVLIL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02080 267 MobiDBLite consensus disorder prediction 1 22 - -
Pumo5g02080 267 MobiDBLite consensus disorder prediction 118 145 - -
Pumo5g02080 267 SMART tSNARE_6 169 236 IPR000727 -
Pumo5g02080 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Pumo5g02080 267 Gene3D - 12 132 - -
Pumo5g02080 267 SMART SynN_4 8 122 IPR006011 GO:0016020
Pumo5g02080 267 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Pumo5g02080 267 CDD SNARE_Qa 177 235 - -
Pumo5g02080 267 Gene3D - 168 267 - -
Pumo5g02080 267 Pfam SNARE domain 211 262 IPR000727 -
Pumo5g02080 267 PANTHER SYNTAXIN 22 256 IPR045242 -
Pumo5g02080 267 FunFam Syntaxin-22 like 167 267 - -
Pumo5g02080 267 FunFam Syntaxin-22 like 15 128 - -
Pumo5g02080 267 SUPERFAMILY t-snare proteins 19 225 IPR010989 GO:0016020|GO:0016192
Pumo5g02080 267 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02080 Pumo-Chr5 57221926 57224949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02080 1 254 SNARE and Associated Proteins AT5G46860 58.527 1.58e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02080 - - gmx:100787141 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02080 5 57221926 57224949 Pumo5g02080 5 57221926 57224949 ECH