Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02049 ATGGTTGGTGCCATAAAAGCAGCAATTGGGGACGCGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCGTGCTGGGAATTGCTTCTGGGTACATAACCAATGCCCTTAACCTTCAACACATCACCTACAATGGTTTCCCTTACCCTTCTTTTCTTGTCACCATTACCCTCGTTTTTGTCCTCGTTTTTCTCTTCACCATCATCGGCAATGTCCTTGGTGGGGCCAGCTTCAACCCCACCGGCACCGCTTCCTTCTACGCCGTTGGTCTCGGCTCGGATACTCTTTTCTCAATGGCGCTTCGGTTCCCTGCGCAGGCAGCTGGCGCTGCGGGTGGTGCAATGGCAATTATGGAAGTGATTCCTGCGAAGTACAGGCACATGATTGGGGGGCCTTCTTTGAAAGTGGATTTGCACACTGGGGCTGTCGCTGAAGGGGTGTTGACCTTTGTGATTACCTTTGCCGTTCTCCTCATCTTCCTCAAGGGCCCTCGTAGTGACTTGTTGAAGACTTGGTTGCTGGCCACGGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACCGGGCCAGCCATGAATCCTGCCAATGCTTTTGGTTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGTCCCTTCGCTGGAGCAATATTGGCTGCTTGGCTGTTCCGTGCTGTCTTTCCACCACCACCACCACCAGAAGTAAAACAGAAGAAAGCATGA 747 0.5114 MVGAIKAAIGDAVLTFMWVFCSSVLGIASGYITNALNLQHITYNGFPYPSFLVTITLVFVLVFLFTIIGNVLGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQAAGAAGGAMAIMEVIPAKYRHMIGGPSLKVDLHTGAVAEGVLTFVITFAVLLIFLKGPRSDLLKTWLLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQFYVYWICPFAGAILAAWLFRAVFPPPPPPEVKQKKA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02049 248 PANTHER AQUAPORIN SIP1-1 3 247 IPR044222 GO:0015250
Pumo5g02049 248 SUPERFAMILY Aquaporin-like 4 244 IPR023271 -
Pumo5g02049 248 FunFam Aquaporin SIP1-1 2 247 - -
Pumo5g02049 248 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g02049 248 Gene3D Glycerol uptake facilitator protein. 3 240 IPR023271 -
Pumo5g02049 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g02049 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g02049 248 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g02049 248 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g02049 248 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g02049 248 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02049 Pumo-Chr5 56659348 56664596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02049 2 248 Major Intrinsic Protein MIP AT5G18290 55.242 8.15e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02049 K09875 - gmx:100792787 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02049 5 56659348 56664596 Pumo5g02049 5 56659348 56664596 ECH