Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02040 ATGGGAAGCCCAGAATCTAATTTGCCACCCGGTTTTAGGTTCCACCCAACCGATGAGGAGCTCATTCTTCACTACCTTAGTAAAAAAATTGCATCCATACCCTTGCCCGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTACCAGCAAAGGCAACCTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGGAAGTACCCAAATGGAGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACTGATAAGACCATAGTTACATCATTGCAAGGAGGAGGAGGAGGAGCACAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACACAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACCACAAACCCATTAAGTTGAAAGACTCCTCCATGAGATTGGATGACTGGGTGCTGTGCCGTATTTACAAGAAGTCCAAACATGCTCTAACTTCAACAGAGGCATCAATAGGGGTAGGTGAGGTAGATCAAGCAGAGGAGAACCTATTCAAAGAGACCCTTTTGCCATTCTCAAAATCTCCAACACCTCCACCTCAAAACACATTGATATCTCAGAAATCTGTGTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTCCTCAGTAGTTTCTTATCTGAGAATCATTCCAACCCACCAGGGGTTGGATCAAGTGCAGGCTTCAACACTGGGAATTTGGATCAGCAATCCTCTCCAATCAACAACAACCCCACCAATGCTTACATGTTTCAGAAGAACCCTCAATTGAACCCTTCAGTCACTAACATGGAAAACATGATGAGGCCAAAGCGCCAAGTTTCAAACATAGATGAGGAAACGTTGTACCCATCAAAGAAATACCTTAGTTCTTCCTCTTGCCACTTCCCTACTAACATCAACACCCAATACGAGAACCCACAATGGAACTACCTCATGAAGCAGTCTTTGATGAATCAACGGTTAATGCTTGGTCCTCATCTTCAATTTCAAGGATAA 1068 0.4466 MGSPESNLPPGFRFHPTDEELILHYLSKKIASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGGGGAQENIGVKKALVFYTGRPPKGVKTNWIMHEYRLVDNHKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEASIGVGEVDQAEENLFKETLLPFSKSPTPPPQNTLISQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGVGSSAGFNTGNLDQQSSPINNNPTNAYMFQKNPQLNPSVTNMENMMRPKRQVSNIDEETLYPSKKYLSSSSCHFPTNINTQYENPQWNYLMKQSLMNQRLMLGPHLQFQG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02040 355 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Pumo5g02040 355 SUPERFAMILY NAC domain 5 168 IPR036093 GO:0003677|GO:0006355
Pumo5g02040 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 273 - -
Pumo5g02040 355 Pfam No apical meristem (NAM) protein 9 141 IPR003441 GO:0003677|GO:0006355
Pumo5g02040 355 FunFam NAC transcription factor 56 17 173 - -
Pumo5g02040 355 Gene3D NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02040 Pumo-Chr5 56282285 56284079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02040 4 355 NAC Transcription Factor Family AT3G04070 52.747 6.36e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g02040 NAM 4.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02040 - - gmx:100170708 649.047