Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02038 ATGGAAGAACCTATTGTGGTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGCTTCAGGTTCCACCCTACTGATGAAGAGATAATCACTTGTTATCTCACTGAGAAGGTGAAGAATAGCAGTTTCAGTGCAATTGCTGTTGGAGAGGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACAAAATCTGGGTACTGGAAGGCCACAGGAAAAGATAAGGAAATTTACAAAGGGAAAGGGAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGAAATTTTGCAAGTTACAGCCTTCCTAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTTTGAGGATAAACTCATCTATTGGAGATGATCTTCTTGATAATTACTCTTCACTCCCACCTCTCATGGATCCTCCTTATGGCAACAACAACACCAACAACACCACTATACCACTTTCATCAACTAAATCACAATCAGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCACCACCACCAGCTTCTCAACAAGCCAGAAGACCACCACCACAGAAGCTATGAGATTCCCGCAATTAACTACACTTCCAACCAAGCCAATCTCAGCAACAACGTTAACCCAATGGGGAACAGCACTCTCTCACAGCCCTTACACATGTTCTCTGATTACTATGTGCACCAAAACAGGATCAAAAGCTCCCTCATGCCAAGTGTTTTAGGCTCAGGCTTTGGTATCAGCAACAACAACAACAACAATAACCATGATGAAGCTATCCTAAGAGCATTTGCAGCCAAGAACAACGAGCACTTGGGTGGATTAATCGACAAACAGTGCAAGGTGGAGCAGTTCTCTTCTAACCACTCACAAGACACAGGCTTGAGCAACGACAGAAACACTGACACATCCTCGGTGGTTTCAAAGCAAGACAACAACAACATGGGAAGAAATAATAGGGCATTGTACGAGGATCTTGAAGGTCCCTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGATGACTACTGA 1236 0.4434 MEEPIVVNKGEEPLDLPPGFRFHPTDEEIITCYLTEKVKNSSFSAIAVGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATKSGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGNFASYSLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSSIGDDLLDNYSSLPPLMDPPYGNNNTNNTTIPLSSTKSQSEGYYLPSFSINNHHHQLLNKPEDHHHRSYEIPAINYTSNQANLSNNVNPMGNSTLSQPLHMFSDYYVHQNRIKSSLMPSVLGSGFGISNNNNNNNHDEAILRAFAAKNNEHLGGLIDKQCKVEQFSSNHSQDTGLSNDRNTDTSSVVSKQDNNNMGRNNRALYEDLEGPSSVAPLSDLECLQWDDDY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02038 411 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 280 - -
Pumo5g02038 411 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Pumo5g02038 411 MobiDBLite consensus disorder prediction 351 382 - -
Pumo5g02038 411 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Pumo5g02038 411 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Pumo5g02038 411 FunFam NAC domain-containing protein 100-like 25 171 - -
Pumo5g02038 411 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02038 Pumo-Chr5 56229263 56231563 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02038 1 390 NAC Transcription Factor Family AT5G18270 49.015 1.17e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g02038 NAM 2.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02038 - - gmx:100784372 716.842