Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02016 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAACGGCTTGGAGATCTTCAGCCTGGTCCACTACCTGTTGATCAAGGGGAGAATTGGCAACAACCTGCTCCAAATCGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATCTGGACCCTGAACCTTGTGAACCTTTGCCAGAACCTGTTGCTTTAGGGGCTCCGGAACCCGTTTACAATCACGTAGAGGTAGTGGCCAATAATAATATTGTGATGGAGGGTGGAAGTGCAGATAAGGTGGCGGGAGCTGAAGAAGAACCAAGTGCAACTCCTGTCCCTGAGAGGGTACAAGTTGGTAACTCTCCTATATATAAGATAGAAAGGAAATTGGGTAAGGGTGGTTTTGGTCAAGTTTATGTTGGCCGAAGGGTAAGTGGTGGCTCTGATCGAACAGGTCCTGATGCGGTTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGTAAAGGTTGCAATTATGGGCCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGCTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTTTACATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATCAATGTCGCCAAATATGGTTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCACTTGAAAGGGTTTGTGCACGGAGATGTGAAACCTGAAAACTTTTTGCTTGGTCAACCCGGAACTGCTGATGATAAGAAGTTATATCTTATCGATCTTGGTCTGGCTTCTAGATGGAAGGATGCATCATCTGGTCAACATGTTGATTATGATCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCTCATTTAGGTAGGACCGGAAGTCGAAGGGATGATCTTGAGTCACTGGCATACACACTAATATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAGATGTCTACTTCATCGGAGTTGATGTGTTGCTTTACTCCTGCTCCATTTAAGCAGTTTCTTGAAGCTGTTACTAATATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCACTTTTTGAAAGCTTGATCGAACCATGCACTCCATTGAGACCTATTAGAATAGATGGAGCTTTGAAGGATGTTAAGGTGTTAACTATTTTGTTTGATTACATTGTGTATTTGAATGCTAAACCCATTGTATAA 1389 0.4392 MPELRSGARRSKRLGDLQPGPLPVDQGENWQQPAPNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEPLPEPVALGAPEPVYNHVEVVANNNIVMEGGSADKVAGAEEEPSATPVPERVQVGNSPIYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAVEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASRWKDASSGQHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSSELMCCFTPAPFKQFLEAVTNMRFDEEPNYSKLISLFESLIEPCTPLRPIRIDGALKDVKVLTILFDYIVYLNAKPIV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02016 462 SUPERFAMILY Protein kinase-like (PK-like) 147 435 IPR011009 -
Pumo5g02016 462 FunFam Casein kinase 1-like protein 119 449 - -
Pumo5g02016 462 Gene3D Transferase(Phosphotransferase) domain 1 115 434 - -
Pumo5g02016 462 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02016 462 SMART serkin_6 147 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02016 462 Pfam Protein kinase domain 147 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02016 462 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Pumo5g02016 462 PANTHER CASEIN KINASE-RELATED 147 426 - -
Pumo5g02016 462 CDD STKc_CK1 147 421 - -
Pumo5g02016 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Pumo5g02016 462 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02016 Pumo-Chr5 55849463 55852142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02016 126 380 MAP Kinase Kinase Kinase AT1G63700 24.806 1.46e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pumo5g02016 Pkinase 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02016 - - gmx:100801967 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02016 5 55849463 55852142 Pumo5g02016 5 55849463 55852142 ECH