Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02002 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAAGCAGGCATTGCAATCACCAAAGGAGGCAAGTTCAAAGGGAGAAGCAGAAACAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCTAGAGCCTATGATGAAGCAGCATGCCTTCTTCGCGGATCCAACACTCGTACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGAAATCTGCTTAACAACAGAAAAGGTATCAAAAAACAGGAAGATGCTAATGCTAATAATGCACCTGCCCCAAGAGTTAGCACCACTAGCAATGCTAGCACTAGTACTTGTACTAGTACTAGTGGTAATTCAAGCAATGGAAATGACAACAATGACAAGTCTCTTTCTACTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAACTGCAGGGAGGACTTTGAGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCTATTGCTCAAATATTGGATATACCAAAGATTGATGATGGCCTCACTAATACAGCTGACTTGGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACGCCAATGAAACTCTCTGGGATCTTCCACCCTTATGCTCATTGTTCTGTTAA 822 0.4173 MEIQFQQPNLQHQKAGIAITKGGKFKGRSRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKQEDANANNAPAPRVSTTSNASTSTCTSTSGNSSNGNDNNDKSLSTQSSNLFDDAYKPDLSNCREDFESGHQSNTSWGFGPVFDRFPIAQILDIPKIDDGLTNTADLELSEFERMKVERQISASLYAINGVQEYMETVQDANETLWDLPPLCSLFC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02002 273 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Pumo5g02002 273 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Pumo5g02002 273 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Pumo5g02002 273 MobiDBLite consensus disorder prediction 114 166 - -
Pumo5g02002 273 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Pumo5g02002 273 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Pumo5g02002 273 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 239 - -
Pumo5g02002 273 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Pumo5g02002 273 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pumo5g02002 273 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Pumo5g02002 273 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Pumo5g02002 273 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02002 Pumo-Chr5 55692613 55693434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02002 10 273 AP2-EREBP Transcription Factor Family AT5G19790 41.758 2.37e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02002 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02002 K09286 - gmx:100796898 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02002 5 55692613 55693434 Pumo5g02002 5 55692613 55693434 ECH
Pumo5g02002 5 55692613 55693434 Pumo6g02227 6 41745877 41747216 PCT