Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01976 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAAGCAGGCATTGCAATCACCAAAGGAGGCAAGTTCAAAGGGAGAAGCAGAAACAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCTAGAGCCTATGATGAAGCAGCATGCCTTCTTCGCGGATCCAACACTCGTACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGAAATCTGCTTAACAACAGAAAAGGTATCAAAAAACAGGAAGATGCTAATGCTAATAATGCACCTGCCCCAAGAGTTAGCACCACTAGCAATGCTAGCACTAGTACTTGTACTAGTACTAGTGGTAATTCAAGCAATGGAAATGACAACAATGACAAGTCTCTTTCTACTGTGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGAGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCTATTGCTCAAATATTGGATATACCAAAGATTGATGATGGCCTCACTAATACAGCTGACTTGGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACGCCAATGAAACTCTCTGGGATCTTCCACCCTTATGCTCATTGTTCTGTTAA 831 0.4176 MEIQFQQPNLQHQKAGIAITKGGKFKGRSRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKQEDANANNAPAPRVSTTSNASTSTCTSTSGNSSNGNDNNDKSLSTVTPQSSNLFDDAYKPDLSNCREDFESGHQSNTSWGFGPVFDRFPIAQILDIPKIDDGLTNTADLELSEFERMKVERQISASLYAINGVQEYMETVQDANETLWDLPPLCSLFC 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01976 276 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Pumo5g01976 276 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 242 - -
Pumo5g01976 276 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Pumo5g01976 276 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pumo5g01976 276 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Pumo5g01976 276 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Pumo5g01976 276 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Pumo5g01976 276 MobiDBLite consensus disorder prediction 126 175 - -
Pumo5g01976 276 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Pumo5g01976 276 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Pumo5g01976 276 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Pumo5g01976 276 MobiDBLite consensus disorder prediction 114 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01976 Pumo-Chr5 55351094 55351924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01976 10 276 AP2-EREBP Transcription Factor Family AT5G19790 41.304 8.08e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g01976 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01976 K09286 - gmx:100796898 483.026