Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01942 ATGGCATGTGAGATGTACAACTCGACAGTGGCAGGGCACGCGGCAACCAGTTCACAGTTGGTGACGCAGACAGTGAATGGTTCACACAAGTTCGAGATAAAAGGCTACTCTTTGCTGACTGGAATGGGCATCGGAAAATTCATCGCGAGTGACACATTCACGGTGGGAGGGCACCAGTGGGCTATATACTTCTACCCCGACGGAAAGAACCACGATGATAACGCTGCTTATGTCTCCATCTTCATCGCACTCGCTTCTGATGACGTCAATGTTCGTGCACTGTTCGAACTTACGTTGCTCGACCAGAGCGGGAGGGGGAAGCACTTGGTTCTTAGCCACTTCAATCTCTCCCTCGAGAGTGGACCTTACACTCTCAAAAACATAGGCAGCATGTGGGGGTGTATGCGCTTTTTCAAACTGACTAATCTGGAGCGGTCGAGGTTCCTAAAGGATGCCTGCCTGAAGATAAATTGCACTGTTGGTGTATTGATGTCGGCGATAGATAGTTCCAAGTCAAACGCAATAGAGGTTCCTTTGTCTGACATTGGGGCACATTTTGGGATGCTGTTAGAGGACAAAGAACTATCAGATGTTACTTTCTCTGTTAGTGGAAAAAGGTTTCGTGCACATAAGGTTGTGTTGGCTGCTTGGTCAACTGTGTTTGAAACTCGATTTTTCAACGGAATGGAAAAGGATGAACGGGAGATAGTTGTTAGTGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTCATTTATAGAGACACTCTTATAGAAGATGAAGAGCTCTATATATCGCATTCGTCATCGTTGTCTTTGCTGTCTGAATCATTTTCAGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGATTTGCCAAGACTTAAGCTGATGTGCGAATCAGTACTTTGCAGAGACATATCTATACATTCTGTTGCCTCTATTCTGGCTATTGCTGATCATTATGGTGCTACCGAATTGAAGTCCAGATGTCTACAATATTCTGCTGAAAACCTTCATGCTGTCATGCAATCTGATGGTTTCAAGTATCTTAAGGAAAATTGTCCATTGCTGCAATTAGAGATGCTAAAGACTGTGGCAGGATGCGAAGAGAAATCTTCTGATAGGAATGTAAGACAACAAACCTCGGAAAATGGAGTTGAAGGAGGTCAAAGAACAAGGGTTGGAAAATGGAGTTGA 1200 0.4408 MACEMYNSTVAGHAATSSQLVTQTVNGSHKFEIKGYSLLTGMGIGKFIASDTFTVGGHQWAIYFYPDGKNHDDNAAYVSIFIALASDDVNVRALFELTLLDQSGRGKHLVLSHFNLSLESGPYTLKNIGSMWGCMRFFKLTNLERSRFLKDACLKINCTVGVLMSAIDSSKSNAIEVPLSDIGAHFGMLLEDKELSDVTFSVSGKRFRAHKVVLAAWSTVFETRFFNGMEKDEREIVVSDMEPKVFKALLHFIYRDTLIEDEELYISHSSSLSLLSESFSAKLLAAAEKYDLPRLKLMCESVLCRDISIHSVASILAIADHYGATELKSRCLQYSAENLHAVMQSDGFKYLKENCPLLQLEMLKTVAGCEEKSSDRNVRQQTSENGVEGGQRTRVGKWS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01942 399 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
Pumo5g01942 399 Gene3D Potassium Channel Kv1.1; Chain A 171 301 IPR011333 -
Pumo5g01942 399 SUPERFAMILY TRAF domain-like 24 163 - -
Pumo5g01942 399 CDD BTB_POZ_BPM_plant 182 304 - -
Pumo5g01942 399 ProSiteProfiles BTB domain profile. 196 262 IPR000210 GO:0005515
Pumo5g01942 399 MobiDBLite consensus disorder prediction 374 399 - -
Pumo5g01942 399 FunFam BTB-POZ and math domain 1 172 301 - -
Pumo5g01942 399 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 361 IPR045005 GO:0016567
Pumo5g01942 399 Gene3D - 306 382 - -
Pumo5g01942 399 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Pumo5g01942 399 SUPERFAMILY POZ domain 176 305 IPR011333 -
Pumo5g01942 399 Pfam BTB And C-terminal Kelch 314 354 IPR011705 -
Pumo5g01942 399 CDD MATH 27 160 IPR002083 GO:0005515
Pumo5g01942 399 SMART math_3 31 143 IPR002083 GO:0005515
Pumo5g01942 399 SMART BTB_4 196 307 IPR000210 GO:0005515
Pumo5g01942 399 Pfam BTB/POZ domain 188 305 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01942 Pumo-Chr5 54355536 54417452 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo5g01942 BTB 2.4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01942 K10523 - gmx:100809683 538.88