Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01931 ATGAATCCAATTATTTCTGCTGCTTCTGTTATTGCTGCTGGGTTGGCCGTAGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGCACTGCTGCAGGGCAAGCTGTAGAAGGGATTGCACGACAACCAGAGGCAGAGGGAAAAATACGAGATGAAATTAGTAAAATTATCCGTGAACGCATTGAGCAATATAATACGGAAGTCAAAATTGTAAATACGGGTACCGTACTTCAAGTAGGCGATGGTATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTGGAATTTGAAGAGGGTACTATAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCAGTAAAAGCAACAGGAAGAATTGCTCAGATACCGGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCAATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGATTAATCGAATCTCCCGCTCCCGGTATTATTTCGAGACGTTCTGTATATGAGCCTCTCCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGACGTGGCCAGCGAGAATTAATTATTGGAGACAGACAAACGGGTAAAACAGCAGTAGCCACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTGACTACCTTACAAGAAAGGGGAGCAATGGAATACACTATTGTAGTAGCTGAAACAGCGGATTCTCCAGCTACATTACAATACCTTGCCCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCTCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCTGGTCGCGAAGCTTATCCGGGGGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGGGCCGCTAAATTAAGTTCTCAGTTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAAACTCAATCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATCTGCCGATCTATTCAATGCTGGAATCAGACCCGCTATTAATGTCGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCACAATTCGCAGAATTAGAAGCTTTTGCCCAATTCGCTTCTGATCTCGATAAAGCTACTCAAAATCAATTAGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACCGTGGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTTGTTGAGTTACGTGCTTACTTAAAGACGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTACAGGAACAGGTAGAAAAAAATTGA 1665 0.4072 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAVGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFKEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01931 554 Gene3D - 417 545 IPR038376 -
Pumo5g01931 554 Pfam ATP synthase subunit C 11 45 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pumo5g01931 554 CDD F1-ATPase_alpha_CD 139 412 IPR033732 GO:0032559
Pumo5g01931 554 PIRSF F_ATPase_subunit_alpha 47 548 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01931 554 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 194 409 IPR000194 GO:0005524
Pumo5g01931 554 NCBIfam F0F1 ATP synthase subunit alpha 51 542 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01931 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 415 IPR027417 -
Pumo5g01931 554 SUPERFAMILY F1F0 ATP synthase subunit C 4 50 IPR035921 -
Pumo5g01931 554 Pfam ATP synthase alpha/beta chain, C terminal domain 416 540 IPR000793 GO:0015986
Pumo5g01931 554 Pfam ATP synthase alpha/beta family, beta-barrel domain 73 137 IPR004100 GO:0046034|GO:1902600
Pumo5g01931 554 CDD ATP-synt_F1_alpha_C 420 545 IPR000793 GO:0015986
Pumo5g01931 554 FunFam ATP synthase subunit alpha 417 547 - -
Pumo5g01931 554 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 417 544 - -
Pumo5g01931 554 Hamap ATP synthase subunit alpha [atpA]. 47 546 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01931 554 PRINTS ATP synthase C subunit signature 33 48 IPR000454 GO:0015078|GO:0015986|GO:0045263
Pumo5g01931 554 PRINTS ATP synthase C subunit signature 12 31 IPR000454 GO:0015078|GO:0015986|GO:0045263
Pumo5g01931 554 FunFam ATP synthase subunit alpha 46 138 - -
Pumo5g01931 554 Gene3D F1F0 ATP synthase subunit C 1 52 IPR038662 -
Pumo5g01931 554 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 50 545 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01931 554 Gene3D - 139 416 IPR027417 -
Pumo5g01931 554 ProSitePatterns ATP synthase alpha and beta subunits signature. 400 409 IPR020003 GO:0005524
Pumo5g01931 554 FunFam ATP synthase subunit alpha 139 416 - -
Pumo5g01931 554 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 55 139 IPR036121 GO:0046034|GO:1902600
Pumo5g01931 554 Gene3D - 53 138 IPR023366 -
Pumo5g01931 554 CDD ATP-synt_F1_alpha_N 72 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01931 Pumo-Chr5 54148934 54154528 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01931 131 415 Primary Pumps ATPases(2) AT4G38510 30.132 1.71e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01931 K02111 - gmx:121173224 922.924