Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01927 ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGCATTGAGCAATATAATACGGAAGTCAAAATTGTAAATACGGGTACCGTACTTCAAGTAGGCGATGGTATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTGGAATTTGAAGAGGGTACTATAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCAGTAAAAGCAACAGGAAGAATTGCTCAGATACCGGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCAATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGATTAATCGAATCTCCCGCTCCCGGTATTATTTCGAGACGTTCTGTATATGAGCCTCTCCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGACGTGGCCAGCGAGAATTAATTATTGGAGACAGACAAACGGGTAAAACAGCAGTAGCCACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTGACTACCTTACAAGAAAGGGGAGCAATGGAATACACTATTGTAGTAGCTGAAACAGCGGATTCTCCAGCTACATTACAATACCTTGCCCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCTCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCTGGTCGCGAAGCTTATCCGGGGGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGGGCCGCTAAATTAAGTTCTCAGTTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAAACTCAATCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATCTGCCGATCTATTCAATGCTGGAATCAGACCCGCTATTAATGTCGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCACAATTCGCAGAATTAGAAGCTTTTGCCCAATTCGCTTCTGATCTCGATAAAGCTACTCAAAATCAATTAGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACCGTGGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTTGTTGAGTTACGTGCTTACTTAAAGACGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTACAGGAACAGGTAGAAAAAAAATTGATTAATCATTTAATAACTTTAGAATTTAACTTTCAAATTCTTAGAATTAGTATCTTTTAA 1593 0.3886 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAVGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFKEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKKLINHLITLEFNFQILRISIF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01927 530 Gene3D - 95 372 IPR027417 -
Pumo5g01927 530 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Pumo5g01927 530 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 501 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01927 530 Pfam ATP synthase alpha/beta chain, C terminal domain 372 496 IPR000793 GO:0015986
Pumo5g01927 530 CDD ATP-synt_F1_alpha_C 376 501 IPR000793 GO:0015986
Pumo5g01927 530 CDD F1-ATPase_alpha_CD 95 368 IPR033732 GO:0032559
Pumo5g01927 530 FunFam ATP synthase subunit alpha 373 503 - -
Pumo5g01927 530 Gene3D - 373 501 IPR038376 -
Pumo5g01927 530 Hamap ATP synthase subunit alpha [atpA]. 2 502 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01927 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
Pumo5g01927 530 FunFam ATP synthase subunit alpha 95 372 - -
Pumo5g01927 530 PIRSF F_ATPase_subunit_alpha 2 504 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01927 530 FunFam ATP synthase subunit alpha 1 94 - -
Pumo5g01927 530 NCBIfam F0F1 ATP synthase subunit alpha 4 498 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo5g01927 530 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Pumo5g01927 530 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Pumo5g01927 530 Gene3D - 3 94 IPR023366 -
Pumo5g01927 530 CDD ATP-synt_F1_alpha_N 28 94 - -
Pumo5g01927 530 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Pumo5g01927 530 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01927 Pumo-Chr5 54097778 54099370 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01927 87 371 Primary Pumps ATPases(2) AT4G38510 30.132 2.08e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01927 K02111 - gmx:121173224 931.013