Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01912 ATGTCCTCATGTGCCACCGTTTTGCTTCTCCTCCTAGCCATGGCCACTACCACCACCTATTGTGGCTCCAAAGAAATGAAGGCTCTGAAGATGGCCCAAATCCAAGTCTCACAAGCTAGGAGTTGGGTTGATGGCTCTGTAAGATTGCATGGCCTTTTGGATCAAACATGTGTGGCCCTAGAAGATTGTGCCAAGCTCTATGGGGAGAGTGAGTCTAGGCTTTCTCACATGCTGGCTAACATGAACCTTTATACCACTCAAGATGCACTTACATGGATCAGTTCAGTGATGACAAGCCACGGAACTTGCATGGATGGGTTGCAAGCAAAAGGGTATCCTCAACCTCAGGATTTGGATAAAAACATGACCATGATGCTTAGGAAAGCACTTGTTTCGTATGCAAAGAACAAAGGCAAAGCCAAAGATCCACTTCAGAAAACATTGTCAGAATCAAATAGTGCTCTTTTAGCATCGTGGAGTAGTGGAACTTCTAATGCAGACTTCACAGTGGCACAGGATGGCTCAGGTACCCACAAAACAATCAATGAAGCAGTAGATGCACTGTCTGCAATGGATAATAGTCATCCTTCAAGACCAGTTATATACATAAAATCAGGGGTCTACAATGAGAAAGTGGATATTGGAATCAATTTGAAGAATGTAATGTTTGTAGGAGATGGCATAGACCAAACTATTGTCACTGGCAATAGAAATGTCATTCAGGGTTATTCAACTATTAGCTCAGCCACATTTGATGTATCAGGAGATGGGTTTTGGGCGAGAGATATGACATTTGAGAACACAGCAGGGCCAAGTGGGCACCAAGCAGTGGCATTAAGGGTTAGTTCAGATCTATCAGTCTTCTATAATTGTAGCTTCAAAGGTTATCAAGACACTCTTCTTGTGCATTCAAATAGACAATTTTACCGTGATTGTCATATATATGGCACCATTGATTTTATATTTGGTGACGCTTCAGTGGTGTTCCAAAATTGTGACATCTTTCTAAGGAGACCAATGGACCACCAAGCCAACTTCATCACGGCACAAGGAAGAGATGATCCTAACAAACCCACTGGGATTTCAATCCAGAGTTGCCAGGTTAAGCCTGCATTTGATTTTGAATCTTCTAAGGACTCAATCAAGAGCTACTTAGGCAGGCCTTGGAAAGAGTACTCAAGGACTATGTTTCTAAAGACAGATTTAGATGGGTTGATTGACCCTAAAGGATGGGGTGAATGGAATGGAGACTTTGCACTTTCAACTTTGTACTATGGAGAGTATATGAACACAGGCAGTGGTTCCTCTACCCAGAACAGGGTGACCTGGCCTGGTTTCCATGTGCTGAATAATGATGATGAGGCCACACCCTTCACAGTGAGTCAATTCTTGCAAGGAGAACAATGGATTCCAACTACAGGTGTGCCATTCTGGTCTGGAATTTAA 1446 0.4295 MSSCATVLLLLLAMATTTTYCGSKEMKALKMAQIQVSQARSWVDGSVRLHGLLDQTCVALEDCAKLYGESESRLSHMLANMNLYTTQDALTWISSVMTSHGTCMDGLQAKGYPQPQDLDKNMTMMLRKALVSYAKNKGKAKDPLQKTLSESNSALLASWSSGTSNADFTVAQDGSGTHKTINEAVDALSAMDNSHPSRPVIYIKSGVYNEKVDIGINLKNVMFVGDGIDQTIVTGNRNVIQGYSTISSATFDVSGDGFWARDMTFENTAGPSGHQAVALRVSSDLSVFYNCSFKGYQDTLLVHSNRQFYRDCHIYGTIDFIFGDASVVFQNCDIFLRRPMDHQANFITAQGRDDPNKPTGISIQSCQVKPAFDFESSKDSIKSYLGRPWKEYSRTMFLKTDLDGLIDPKGWGEWNGDFALSTLYYGEYMNTGSGSSTQNRVTWPGFHVLNNDDEATPFTVSQFLQGEQWIPTTGVPFWSGI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01912 481 Pfam Plant invertase/pectin methylesterase inhibitor 32 125 IPR006501 GO:0004857
Pumo5g01912 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 135 IPR035513 -
Pumo5g01912 481 Gene3D - 161 481 IPR012334 -
Pumo5g01912 481 PANTHER PECTINESTERASE 30 472 - -
Pumo5g01912 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 112 IPR035513 -
Pumo5g01912 481 NCBIfam pectinesterase inhibitor domain 29 125 IPR006501 GO:0004857
Pumo5g01912 481 SUPERFAMILY Pectin lyase-like 163 480 IPR011050 -
Pumo5g01912 481 Pfam Pectinesterase 167 467 IPR000070 GO:0030599|GO:0042545
Pumo5g01912 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Pumo5g01912 481 FunFam Pectinesterase 161 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01912 Pumo-Chr5 53763275 53771644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01912 8 481 Carbohydrate Esterase AT3G60730 53.543 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01912 K01051 - gmx:100810741 883.248