Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01910 ATGGTTTTCTTTTGTGTGGTGTTGATCAGAAAGGAACTGGATTTCTTGCTCATCAAGGATTTATTAATGGGGTCACCTGTTAATGGAGTTGATTCTTTATCAGAGGTTCAGAATTCGGTTTCTGTGGTAGATCATGATCCTCCTTCGACATCTGGGATTCCCCGGCCTTCTCGGCCTCCATCAAGAGCATCTATAAATTATGGGGCTCCTTCCAGTCAGCATAACTATGGAATGAAGAGCATCCACCATCAAAATCAGGAGACTGAAAATGTGGAGCGCGACGGAATGCCCAATACAGAGAAGCAGTATTATGATGCTAATGGCAAATCTGACTATGTGAGCATCAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCACAATGGAAACAAAATTAAGCATCAAGCAACCATTAGACACTTCCAAGAATTGTGATTCTAGCGGTGTATTAGAATCTGACAAATTAGGTTCATCAAAAGGAGTTGTTGATCAAACAAAGAGTTACTGTCAATCAGAGATTACTTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGCCAATACTGGAACCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAACGAGAGCAGGAAGACCAGCATCTGTAGAGGGAGTACTGGAAGCGACGTTAGCGATGAGAGCAGCACCAGTAGCTTGAGCAGTGCTTTGTATAAACCCCACAAGGCAAATGATATAAGATGGGAAGCGATTCAAGCCATCCGTGTCCGTGATGGGGTGTTCGAAATGAAACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCCGAGTTAAGTGGCACAAGGACTTGTTTTGCCATGAAAGTAATGAACAAAACCGAGTTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACGGAGAGAGAGATACTGCAGTCTCTAGATCATCCCTTTCTACCCACATTATACACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAATTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTATGTGGCTGAAGTTCTCCTTGCTTTGGAATACTTGCACATGCTTGGGGTCATCTACAGAGACCTTAAGCCTGAGAATGTGTTGGTGAGAGAAGATGGTCATATAATGCTATCAGATTTTGATCTCTCTCTAAGGTGTGCTGTCAGTCCAACTCTGGTGAAGTCATCAAACTCTAGCTTGGAGACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTCAACCAACTTGTGTGATACAGCCAGACTGCATTCAACCTTCGTGTTTCACACCGCGCTTCTTCTCCAGCAAATCCAAGAAAGAGAAAAAGTCGAAACCAAAGAATGACGTGCAAAATCAGGTGACCCCTCTCCCCGAGCTTATCGCCGAGCCCACGAATGCTCGATCAATGTCCTTCGTGGGGACACACGAGTACCTGGCACCTGAAATTATCAAAGGTGAAGGGCATGGCAGTGCCGTAGACTGGTGGACATTTGGGATATTCTTATACGAGCTCTTGTTTGGTAGAACACCGTTCAAAGGTTCGGCAAACCGAGCAACGCTGTTCAATGTTGTTGGCCAGCCCTTGAAATTCCCAGAATCCCCTCCTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGTTTGCTCGTGAAAGAGCCGCAGAATCGCCTTGCATACAGACGCGGAGCTACAGAAATAAAGCAACATCCATTCTTTCATAATGTTAACTGGGCACTGATCCGGTGTGCAAATCCTCCAGAAGTTCCAAGACAGGCCATGAAAGCACTTGCAGCTGAAAAGGTGCCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA 1980 0.4424 MVFFCVVLIRKELDFLLIKDLLMGSPVNGVDSLSEVQNSVSVVDHDPPSTSGIPRPSRPPSRASINYGAPSSQHNYGMKSIHHQNQETENVERDGMPNTEKQYYDANGKSDYVSINKAVESCLGKNISTMETKLSIKQPLDTSKNCDSSGVLESDKLGSSKGVVDQTKSYCQSEITFCPSPQNSFYSEAKESFANTGTSECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRVRDGVFEMKHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSSLETKSSGYCIQPACIQPTCVIQPDCIQPSCFTPRFFSSKSKKEKKSKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLKFPESPPVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQAMKALAAEKVPGVKPSGNYLDIDFF 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01910 659 FunFam serine/threonine-protein kinase D6PK-like 510 633 - -
Pumo5g01910 659 Gene3D Transferase(Phosphotransferase) domain 1 364 632 - -
Pumo5g01910 659 MobiDBLite consensus disorder prediction 41 69 - -
Pumo5g01910 659 SMART serkin_6 278 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01910 659 SUPERFAMILY Protein kinase-like (PK-like) 254 634 IPR011009 -
Pumo5g01910 659 CDD STKc_phototropin_like 276 635 - -
Pumo5g01910 659 PANTHER FLIPPASE KINASE 1-RELATED 116 637 - -
Pumo5g01910 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Pumo5g01910 659 FunFam Serine/threonine-protein kinase D6PK-like 276 361 - -
Pumo5g01910 659 ProSiteProfiles Protein kinase domain profile. 278 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01910 659 Pfam Protein kinase domain 512 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01910 659 Pfam Protein kinase domain 279 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01910 659 Gene3D Phosphorylase Kinase; domain 1 270 363 - -
Pumo5g01910 659 FunFam serine/threonine-protein kinase D6PK-like 362 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01910 Pumo-Chr5 53693218 53696747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01910 182 659 AGC Kinase Gene Family AT5G47750 70.968 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo5g01910 Pkinase 7.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01910 K08286 - gmx:100802402 1130.55