Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01906 ATGGAGAAAGAGGTTGGGGAAAACCTTTGGAATGGTAACACAGAAATGCAGATTCAAGCAGCTGTGGAACTCAGGAAACTCAGCAGGAAGCAGAGGCACAATTTGGTGGAGAGTGGAGTTATGGTACCTCTAATTTCCATGCTTCAATATGAAAACTATGAAGCCATTGAAGCTGCTCTGTGTGCTCTACTTAGCCTTGCCTTTGGAAGTGAAAGAAACAAGTCTCGGATCATCAAGTCAGGAGCATTGCCAGTGTTGCTGAGTCTCTTCCATTGCCAAAGCCAGACAGTGGTGGAATTGACAATAGCCACATTGCTAACCATCTCCTCTTGCAACTCAAACAAGGTAGCAATTGCTTCCTCTGGGGCCATCCAACTCTTAGCTCAATTTCTCAACAGCACAAGTAGCACTCAGTCCAAGCTTGACACATTAGCTACCCTCCACAACCTCTCAACATGCCAAGAGATTATTGCTCCATTCATTGTCTCTTCTGGGGTCATACTTTCCTTGCTTGAACTCATCCACACATCAGAAAAATCATCCACATTGGTTGAGAAGGCAATTGGGTTGCTAGAACACATTGTCACTTCATCAAAGAGTGCACTTTGTGAGGCTGCTAGTATTGGGGGAGCAGTTAGGACCTTAGTAGAGACTATTGAAGATGGGTCATTTCAAAGCAAAGAGCATGCAGTGGGGACACTCCTACTTTTTTGCCAAAGCAGCAGAGAAAAATATAGAGGAATGATCTTGAGAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACTTGGAGAGCCAAAAATTTGGCCAAGAAATTGTTGCTGCTTCTGAGGGATTGCTCCAATTATAGTTCAACTAGTAAACAAATTAATTATGAGGATGTGGAACGGATCATGGAAGAAATTGATGATGCAGAAGGGGAGGAATTGGCAGAGACTACGTTGAGATTGGTAGAGGAAATGGTTGCAAAACTTGGTACATAA 993 0.4371 MEKEVGENLWNGNTEMQIQAAVELRKLSRKQRHNLVESGVMVPLISMLQYENYEAIEAALCALLSLAFGSERNKSRIIKSGALPVLLSLFHCQSQTVVELTIATLLTISSCNSNKVAIASSGAIQLLAQFLNSTSSTQSKLDTLATLHNLSTCQEIIAPFIVSSGVILSLLELIHTSEKSSTLVEKAIGLLEHIVTSSKSALCEAASIGGAVRTLVETIEDGSFQSKEHAVGTLLLFCQSSREKYRGMILREGVMPGLLQLSVDGTWRAKNLAKKLLLLLRDCSNYSSTSKQINYEDVERIMEEIDDAEGEELAETTLRLVEEMVAKLGT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01906 330 SMART arm_5 28 68 IPR000225 GO:0005515
Pumo5g01906 330 SMART arm_5 153 196 IPR000225 GO:0005515
Pumo5g01906 330 SMART arm_5 111 152 IPR000225 GO:0005515
Pumo5g01906 330 SMART arm_5 70 110 IPR000225 GO:0005515
Pumo5g01906 330 SMART arm_5 199 239 IPR000225 GO:0005515
Pumo5g01906 330 SUPERFAMILY ARM repeat 7 283 IPR016024 -
Pumo5g01906 330 FunFam U-box domain-containing protein 4 202 319 - -
Pumo5g01906 330 FunFam U-box domain-containing protein 4 3 198 - -
Pumo5g01906 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Pumo5g01906 330 Gene3D - 3 118 IPR011989 -
Pumo5g01906 330 PANTHER U BOX DOMAIN-CONTAINING 13 283 - -
Pumo5g01906 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 194 IPR000225 GO:0005515
Pumo5g01906 330 Gene3D - 119 325 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01906 Pumo-Chr5 53632008 53633856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01906 3 282 U-box Gene Family AT2G23140 32.632 1.19e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01906 - - gmx:100811007 578.941