Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01890 ATGGGTCCGAAGTCCTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGAAGAAGATGAGAAAGAAGGTGAATATGTGGTTTCGAAAATATTTTATCAACAGCAAAAGCAGACTGAGAAAAATGAGGACAATCCAATGGCTGAAGATCCTGACAATATAATATCACGAACAAGTCCAAGGACTCCGAAACCAAATCCCCCCAATCCACCTCGTGCGGGAAAATCTGTTGATTGTGACGATAACATTGATGAAACTGTACTTCTGTCTTCTGCCCAGGATACCAAGACAATCCCTGGAGAATCACATGCCCCACAATCTGATATTCAGGATCAAGAAAACACTGGCAATGCTGCATGGTTAGCTGGCGAATCTCAGGCTGAGGAAAACACCGAATATGATGGCTTGGACGACATCTTATTGTGCAAGGAGATCTTAGATTCTTCTGCTCTGTTAAATGACTCTGGATTGGACTCCACCAATCTCGATGACATTGCAAGCTATGCTACCCAAGTGGCTAGAGACGATAATGAATCTTGCGGAATTTCTGTCCTGGATACACTGGAATTGGATACTCCTCCAGATTTTGATCTTTCTAATTTGAATTTTTGTTCTCAAGACAGTATCCTTGACTGGATGGACAGGTTATGA 657 0.4231 MGPKSYKSNWVMHQYHLGTEEDEKEGEYVVSKIFYQQQKQTEKNEDNPMAEDPDNIISRTSPRTPKPNPPNPPRAGKSVDCDDNIDETVLLSSAQDTKTIPGESHAPQSDIQDQENTGNAAWLAGESQAEENTEYDGLDDILLCKEILDSSALLNDSGLDSTNLDDIASYATQVARDDNESCGISVLDTLELDTPPDFDLSNLNFCSQDSILDWMDRL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01890 218 ProSiteProfiles NAC domain profile. 1 36 IPR003441 GO:0003677|GO:0006355
Pumo5g01890 218 SUPERFAMILY NAC domain 3 36 IPR036093 GO:0003677|GO:0006355
Pumo5g01890 218 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 131 IPR044799 GO:0003700
Pumo5g01890 218 MobiDBLite consensus disorder prediction 37 118 - -
Pumo5g01890 218 Gene3D NAC domain 1 42 IPR036093 GO:0003677|GO:0006355
Pumo5g01890 218 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01890 Pumo-Chr5 53208368 53209379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01890 7 38 NAC Transcription Factor Family AT4G28500 81.250 2.83e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01890 - - gmx:100780442 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01890 5 53208368 53209379 Pumo5g01890 5 53208368 53209379 ECH