Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01889 ATGGCGAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGCGAATGTCCAAACTGTTCTTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTACAACTCTTAGAACATTTAGCAGCAAAGTGTGGCATTGGGAACACACAGCCACACATGTTTATCAATGAGTTCATCCCCACACTGGAAGGAGACCAAGGTATTTGCTACACACATCCTGAGAATCTTCCAGGTGCTAAGAAAGATGGGAATTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTAGTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACGAAAGCTTATAATAGAAGATGGAGTACACAAGGGCTTTAA 510 0.4235 MARSWLIDIGGFAKKVKSTTLSSADQIKDCGAYRECPNCSYHIDNSDVSTEWPGFPLGVKFDPSDVQLLEHLAAKCGIGNTQPHMFINEFIPTLEGDQGICYTHPENLPGAKKDGNYVHFFHRTTNAYASGQRKRRKIHHQQGLTEEHVRWHKTGKTKAYNRRWSTQGL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01889 169 Pfam No apical meristem (NAM) protein 56 160 IPR003441 GO:0003677|GO:0006355
Pumo5g01889 169 SUPERFAMILY NAC domain 39 159 IPR036093 GO:0003677|GO:0006355
Pumo5g01889 169 Gene3D NAC domain 64 169 IPR036093 GO:0003677|GO:0006355
Pumo5g01889 169 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 159 IPR044799 GO:0003700
Pumo5g01889 169 ProSiteProfiles NAC domain profile. 55 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01889 Pumo-Chr5 53205228 53208332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01889 36 158 NAC Transcription Factor Family AT1G28470 50.781 1.07e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g01889 NAM 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01889 - - gmx:100780442 337.421