Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01888 ATGGGATCTGGCAATGAGGTTCACTCAGTTGTGGATTTCAATTTGGATGCCAAGTGGCTCATAGATCCCAAGCAACTATTTGTTGGGCCTAAAATTGGGGAAGGTGCTCATGCCAAAGTCTATGAAGGAAAATATAAAAATCAGAACGTTGCTGTTAAGATTATCAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGGCAGAGAGATTGCCATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTCTTAGGTGGAACATTGCGCAAATATCTGTGGAGTATCCGGCCAAAGTGCTTGGATATACGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTGCACTCTCACGGGATCATTCACCGAGACCTTAAACCAGATAACTTGATATTGACAGAAGATCATAAAACAGTTAAACTTGCTGATTTCGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGGACATATCGATGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCCTATAGCTTTGCTATAGTGTTGTGGGAGCTCATTCATAATAGGTTGCCTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCGGCGGCATTTAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTAGTCAAATAATAGAGATGCTGATTCGATATTTAACTACCATTTCACCGTCTGAGCCAGTTGTTCCGATGCGAATCACATCTAAGAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTGGAAGAGATGATTCTGGAGAAACCCCAAAAGACAATATTGAAGGCAGGTCTAAAGGGGTTTTCTTCTGCTGTTACTGA 1047 0.4222 MGSGNEVHSVVDFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFGREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWSIRPKCLDIRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTEDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNRLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIEMLIRYLTTISPSEPVVPMRITSKNAVLPPESPGTSALMAGRDDSGETPKDNIEGRSKGVFFCCY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01888 348 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Pumo5g01888 348 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 20 286 - -
Pumo5g01888 348 FunFam Kinase suppressor of Ras 1 15 105 - -
Pumo5g01888 348 Gene3D Transferase(Phosphotransferase) domain 1 107 304 - -
Pumo5g01888 348 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Pumo5g01888 348 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Pumo5g01888 348 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Pumo5g01888 348 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Pumo5g01888 348 SUPERFAMILY Protein kinase-like (PK-like) 17 309 IPR011009 -
Pumo5g01888 348 CDD STKc_MAP3K-like 32 286 - -
Pumo5g01888 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Pumo5g01888 348 FunFam serine/threonine-protein kinase HT1 107 307 - -
Pumo5g01888 348 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01888 348 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Pumo5g01888 348 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01888 348 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Pumo5g01888 348 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01888 Pumo-Chr5 53183933 53188012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01888 1 347 MAP Kinase Kinase Kinase AT3G27560 76.836 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo5g01888 PK_Tyr_Ser-Thr 4.8e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01888 - - gmx:100809826 689.108