Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01881 ATGACTGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCCACCTTTAAAGGGCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTATTCATGATCATCTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGGTCTCTTTTGAAGACATTCGAGGGTCATCTAGACCGTCTTGCACGCATTGCCTTCCACCCATCAGGGAAGTACCTGGGTACTGCTAGCTTTGATAAGACATGGAGATTATGGGATATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAACGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAAGGTTACTTTTTGGTTACTGCCTCATATGACATGACTGCTAAGGTATGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACTTCTGTGGATGTTCTCGGAGATGGCGGGCATATTGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAATACGATTGATGAACAAGCTATGGATGTTGACTAA 822 0.4416 MTGASKLWSMPKIKKHSTFKGHTERATDVAYSPIHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGHIVTVSHDRTIKLWSSNTIDEQAMDVD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01881 273 Gene3D - 203 270 IPR015943 GO:0005515
Pumo5g01881 273 CDD WD40 6 261 - -
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats profile. 19 51 IPR001680 GO:0005515
Pumo5g01881 273 Pfam WD domain, G-beta repeat 54 92 IPR001680 GO:0005515
Pumo5g01881 273 Pfam WD domain, G-beta repeat 17 51 IPR001680 GO:0005515
Pumo5g01881 273 Pfam WD domain, G-beta repeat 224 261 IPR001680 GO:0005515
Pumo5g01881 273 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515
Pumo5g01881 273 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Pumo5g01881 273 Pfam WD domain, G-beta repeat 103 134 IPR001680 GO:0005515
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 96 - -
Pumo5g01881 273 Gene3D - 1 202 IPR015943 GO:0005515
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 228 IPR001680 GO:0005515
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 261 - -
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 219 - -
Pumo5g01881 273 ProSitePatterns Trp-Asp (WD) repeats signature. 79 93 IPR019775 -
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 139 - -
Pumo5g01881 273 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Pumo5g01881 273 PANTHER WD40 REPEAT PROTEIN 2 262 - -
Pumo5g01881 273 SUPERFAMILY WD40 repeat-like 4 260 IPR036322 GO:0005515
Pumo5g01881 273 PRINTS G protein beta WD-40 repeat signature 79 93 IPR020472 -
Pumo5g01881 273 PRINTS G protein beta WD-40 repeat signature 38 52 IPR020472 -
Pumo5g01881 273 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 143 IPR001680 GO:0005515
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 19 51 - -
Pumo5g01881 273 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Pumo5g01881 273 SMART WD40_4 53 92 IPR001680 GO:0005515
Pumo5g01881 273 SMART WD40_4 95 134 IPR001680 GO:0005515
Pumo5g01881 273 SMART WD40_4 12 51 IPR001680 GO:0005515
Pumo5g01881 273 SMART WD40_4 179 219 IPR001680 GO:0005515
Pumo5g01881 273 SMART WD40_4 137 176 IPR001680 GO:0005515
Pumo5g01881 273 SMART WD40_4 222 261 IPR001680 GO:0005515
Pumo5g01881 273 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 104 273 - -
Pumo5g01881 273 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01881 64 268 U-box Gene Family AT2G33340 20.522 1.16e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01881 K12662 - gmx:100788948 548.895