Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01878 ATGGACTCACCGCCCCGTAACCACCACGCCGTCGACGGAGACGCCAACGACGTCGTTAGACCCTTTTCCCACCACCGCGACGACGACGACGACGACAAGCCCCAGCCTCTCACCGGCGACGGCGCCAGTCCCGGAAAGATATTTATAGGGGGTTTGGCGAGAGAAACGACGATTGCGCAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGTTTCGGCTTCATCACTTATGCCGATCCCTCTGTGGTTGATACGGTGATTGAGGACACTCACATTATCAATGGCAAGCAGGTGGAGATTAAGCGGACAATACCCAGGGGGGCTGTTGGGTCAAACTCGAAGGACTTCCGAACGAAGAAGATTTTTGTGGGTGGAATTCCTTCGACTGTGACCGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCTACTAATCGTTCACGTGGATTTGGCTTTATCACTTATGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCAAATCCACCAGCTCCGTCATCCAAGCGCTATAATGACTCCCGGTCTTCATATGGTGGTGGATATGGAGATGCTTACGATGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTAGTGGGTATGGAGGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCACTTGGGTATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGCACCTAGTGAGGGTTATGGGGCATATGGTGGTGGTGGTTCCTCTGGTAGTGCCTATGGAAGCAGCTATGATGCCAGCTTAGGGGGTGGATATGGGGGACCTGCTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGGTCGATATCATCCTTATGGAAGATAG 1116 0.509 MDSPPRNHHAVDGDANDVVRPFSHHRDDDDDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDSRSSYGGGYGDAYDGFGGNFGMGGYRSGGAYGGRGSAYGGFGSEFSGYGGYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGAPSEGYGAYGGGGSSGSAYGSSYDASLGGGYGGPAGGSFYGTRGGYGGAGTGRYHPYGR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01878 371 Gene3D - 45 124 IPR012677 -
Pumo5g01878 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Pumo5g01878 371 Gene3D - 127 243 IPR012677 -
Pumo5g01878 371 FunFam Heterogeneous nuclear ribonucleoprotein 1 127 248 - -
Pumo5g01878 371 SUPERFAMILY RNA-binding domain, RBD 41 124 IPR035979 GO:0003676
Pumo5g01878 371 FunFam Heterogeneous nuclear ribonucleoprotein 1 44 126 - -
Pumo5g01878 371 MobiDBLite consensus disorder prediction 209 230 - -
Pumo5g01878 371 SMART rrm1_1 46 117 IPR000504 GO:0003723
Pumo5g01878 371 SMART rrm1_1 136 209 IPR000504 GO:0003723
Pumo5g01878 371 SUPERFAMILY RNA-binding domain, RBD 131 243 IPR035979 GO:0003676
Pumo5g01878 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 121 IPR000504 GO:0003723
Pumo5g01878 371 MobiDBLite consensus disorder prediction 1 36 - -
Pumo5g01878 371 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 28 371 - -
Pumo5g01878 371 MobiDBLite consensus disorder prediction 1 45 - -
Pumo5g01878 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 205 IPR000504 GO:0003723
Pumo5g01878 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01878 Pumo-Chr5 52917327 52921655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01878 41 195 Eukaryotic Initiation Factors Gene Family AT1G71770 26.744 5.36e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01878 K12741 - gmx:100813165 501.901