Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01876 ATGACAACAAGAGAGGCAAGGTTGTCCACTAAAATCCTTTGGATGAGGAGAATGTGTGTGCTCAGACGCTTGCTTCACAAGTACAGGGAATCTAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAACATTTTCAAGAACAAGAGGGTTTTAATGGAGAGCTTACACAAGTCCAAAGCTGCGAAGGCAAGAAAGAAGACCTTGTTTGATCAGTTTGAGGCCAAGCGTGCCAAGAACAAGGTCAGTAGAGAAAGGAAGATTGCCTGGAGGGAGGAACGATTGGCCCAAGTTTACCGTTCTTGA 321 0.4424 MTTREARLSTKILWMRRMCVLRRLLHKYRESKKIDKHMYHDMYMKVKGNIFKNKRVLMESLHKSKAAKARKKTLFDQFEAKRAKNKVSRERKIAWREERLAQVYRS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01876 106 SMART Ribosomal_L19e_2 1 65 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pumo5g01876 106 Gene3D - 1 106 - -
Pumo5g01876 106 PANTHER 60S RIBOSOMAL PROTEIN L19 2 103 IPR039547 GO:0003723|GO:0003735|GO:0022625
Pumo5g01876 106 SUPERFAMILY Ribosomal protein L19 (L19e) 3 63 IPR035970 GO:0003735|GO:0005840|GO:0006412
Pumo5g01876 106 Pfam Ribosomal protein L19e 3 64 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01876 Pumo-Chr5 52862896 52863766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01876 3 102 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.000 1.92e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01876 K02885 - csin:114286570 179.489