Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01874 ATGGAAACCATGTCCACAACACCTTTCACAATGAAGGTACTTGAGCAGTGCAGAATCACTCTCCCTCCAAACACAGCTCCAACTACCTCTTCCCTCCCCCTAACCTTCTTTGACCTTCCTTGGCTTTTCTTCTCTCCAAGCCAACCTTTATTTTTCTATGAATTCCCTCACACAACCTCTCATTTCACAGCCACAATTGTCCCAAAACTAAAGCAATCTCTCTCTCACACACTTCAACACTACTACCCTTTTGCTGGCACATTTTTTCCCTCTTCTGATCTCACCAAACCCCATCTCATTTTCCCTCATGACATGTCAGTTTCATTGACAGTCACTGAGTCAAATGGAGACTTTAATCACTTTTGTAACAATCACCCTAGAGATGTCAAAGATTTCCACTTACTTGTGCCCAAATTGGCATCAAGCTTTTCACTTGAAGGCAAAGAAGAGTTTCCTCTGCTAGCTATTCAAGTAACACTATTCCCAAATGTTGGTCTTTGCATTGGCCTTGCTTTTCACCATGTTGTTGCTGATGGGAGGACCTTCCACAATTTCTTCAACACTTGGGCCTCATATTGCTGCAGCTTTGGTTCAGCTTCAGCATTTCCACTAAAGTCACTGCCATTGTATGATCGAAGTGTGATTTTCGATGCAAAGGGCCTTGAAGAGGTTTTCTTGAAAGAATGGAGAAAAAGAAGACTAGTGAAGAACATTGCCATTGGTAGAGAACCCAACTTAGTAGATCTCTCAGGTATGGTCAGAGCCACTTTCTTAATGAGTGCCACAAAAATGGAAAAAATTAAGCACTTCATTATTAATTGTTGCAAAGAAAAGAATCAACCTCAACCTATTCATTTATCTGCTTATGTGTTAACTTGTGCATTTGTGTGGGTTTGTTTACTAAAAACCCAACAATGCTATGAGAAAGTGAAGAATAGCCATGAAGACCCCACATACTTTGGATTTATTGCTGGTGGCATAACTAGATTGGACTATCCAGTGCCAAGGACATATTTGGGCAATTGTGTTGGCTTTGGTAGAGCAACAGTGAGAAGAAAAGAGTTACTTGGAGAAGATGGGGTTGTTGCTGCAGCTAGAGCAATTGGAAGCACAGTTAAGAAGCTTGATGCATCCCTTTTTGGTGGGGCTGAGAAGTGGATTTTGGATTGGGAGGTGTTGCATGGGTCAGAGCAACATGTGCATGCTACCTGGTCTCCAAAATTGAAGCTTTATGAATTGGATTTTGGGTGGGGGAGGCCCAAGAAAATAGAGGAGATCTCAATTGATTATACAAGAGCTGTCTCACTTATTCAGAGCAGAGATTTTGAGGGTGGAATTGAGATAGGCTTGGCTTTACCTAAGAGTAAGATGGATACTTTCTCCATTTTGTTCACTAAAGGACTTGGTGCTCTTCCATGA 1419 0.4165 METMSTTPFTMKVLEQCRITLPPNTAPTTSSLPLTFFDLPWLFFSPSQPLFFYEFPHTTSHFTATIVPKLKQSLSHTLQHYYPFAGTFFPSSDLTKPHLIFPHDMSVSLTVTESNGDFNHFCNNHPRDVKDFHLLVPKLASSFSLEGKEEFPLLAIQVTLFPNVGLCIGLAFHHVVADGRTFHNFFNTWASYCCSFGSASAFPLKSLPLYDRSVIFDAKGLEEVFLKEWRKRRLVKNIAIGREPNLVDLSGMVRATFLMSATKMEKIKHFIINCCKEKNQPQPIHLSAYVLTCAFVWVCLLKTQQCYEKVKNSHEDPTYFGFIAGGITRLDYPVPRTYLGNCVGFGRATVRRKELLGEDGVVAAARAIGSTVKKLDASLFGGAEKWILDWEVLHGSEQHVHATWSPKLKLYELDFGWGRPKKIEEISIDYTRAVSLIQSRDFEGGIEIGLALPKSKMDTFSILFTKGLGALP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01874 472 Pfam Transferase family 23 461 - -
Pumo5g01874 472 Gene3D - 250 470 IPR023213 -
Pumo5g01874 472 PANTHER - 11 468 - -
Pumo5g01874 472 Gene3D - 10 240 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01874 Pumo-Chr5 52745674 52747206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01874 43 460 Monolignol Biosynthesis Gene Families AT5G48930 23.239 9.01e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01874 - - gmx:100817166 816.224