Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01871 ATGATGTCCCCTAATCCAAATTTCCTTCATTCCCCTCATTCCAACCTTGGCTTATCCCACATTCCCAAATGGAACATCTTCTTCCCCTGCAACTCCACCAAACCCCAAACCCACCAACTCTACTCCTTCACCCAATCGGGTCGCTCCCAAACCTTCCGCTGCCAATTCGGTCCCCCGTTCACCAAACGGGTCGGGTTTGCGGCATCCATTCTCCCCGGCGGAAGCTGGTGGGCCTTGCCGGAGCTGCGGGAAGACGGCGCGGAGCCGACGGTTGCGATGCTCGCTCTCCGGCGAATGTGGGAGCTGGTCGCCGATGAGCGACGGGTCGCGTTTGTGGCGGTTGGGTCCCTTGTAATCGCTGCTCTTTCAGAAATCACCATGCCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTGAGGCTGTGGCATTCTCTAGGAATGCACAGTTTTTGCTTCTTCTGTGTTTAACTTCAGGGATATGCAGTGGTCTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTACGAGAAAACTTATATACAGCAATTCTTTTTCAGGACATCTCCTATTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGATCTTCAGCTGATATTACGCAACACTTGTCAGGGAACTGGAGCAATAATTAATTTGATGGCTTTATCTTGGCCTCTGGCATTATCTGCCTTGGTGATTTGTTCTATTTTATCTGCAATATTCTTGGTTTATGGCCAGTATCAAAGAAAAGCAGCAAAGTTAATTCAAGATTTCACAGCTTGTGCCAATGACGTTGCTCAGGAGACACTTTCTTCAATAAGAATTGTCCGAGCTAATGGAACAGGAAAAAAAGAATTTGGAAGGTACAAGCAATGTCTGCAGAGCTTAGCATTTATAAATGTTCGAGAGAGTGTGGCTTCTGGGTTCTGGAACCTGATCTTTAACATCTTATACCGTTCAACTCAGATATTTGCAGTGCTGCTAGTAGGTATGTCTGTTCTCAGATGTCGTGTAACTGTGGAACAACTTACAAAGTATGTACTATACTGTGAGTGGTTGATATATGCTACTTGGAGGGTGACAAACAGCTTAACATCATTACTGCAGTCCATTGGAGCATCTGAACAAATTTTCCAACTGATGAATCTTTTGCCCAGTGACCAATTCTTAGCCAAAGGAGTGAAGTTGCAGAGGTTAGTGGGGCATATTCAGTTTGCAAATGTATCATTTCATTATCCTGCAAGGAATATGATGCCTGTTCTAGAACACTTAAACTTCTCCATAGAAGCAAATCAAGTCATTGCCATTGTAAGATTTCTCTTCATTCCTAGTGATTTAATGTTGGTGATGCTCAAAGATTAA 1431 0.4423 MMSPNPNFLHSPHSNLGLSHIPKWNIFFPCNSTKPQTHQLYSFTQSGRSQTFRCQFGPPFTKRVGFAASILPGGSWWALPELREDGAEPTVAMLALRRMWELVADERRVAFVAVGSLVIAALSEITMPSILAASIFSAQSGEAVAFSRNAQFLLLLCLTSGICSGLRSGCFGILNVTLVKRLRENLYTAILFQDISYFDKERVGDLTSRLAADCQRLSHVIGNDLQLILRNTCQGTGAIINLMALSWPLALSALVICSILSAIFLVYGQYQRKAAKLIQDFTACANDVAQETLSSIRIVRANGTGKKEFGRYKQCLQSLAFINVRESVASGFWNLIFNILYRSTQIFAVLLVGMSVLRCRVTVEQLTKYVLYCEWLIYATWRVTNSLTSLLQSIGASEQIFQLMNLLPSDQFLAKGVKLQRLVGHIQFANVSFHYPARNMMPVLEHLNFSIEANQVIAIVRFLFIPSDLMLVMLKD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01871 476 CDD ABC_6TM_TAP 113 400 - -
Pumo5g01871 476 Gene3D - 416 460 IPR027417 -
Pumo5g01871 476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g01871 476 Gene3D ABC transporter type 1, transmembrane domain 91 410 IPR036640 GO:0005524|GO:0016020
Pumo5g01871 476 Pfam ABC transporter transmembrane region 116 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g01871 476 SUPERFAMILY ABC transporter transmembrane region 97 410 IPR036640 GO:0005524|GO:0016020
Pumo5g01871 476 PANTHER ABC TRANSPORTER B FAMILY 91 460 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01871 Pumo-Chr5 52688147 52699720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01871 98 460 Calmodulin-binding Proteins AT2G36910 20.301 1.25e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01871 - - gmx:100797529 810.446