Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01866 ATGGGGAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCAGAGAATACATTAGGCTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATAACCTCAGATGAAGAAGAGCTCATCATCAGACTCCACAAGCTCCTGGGAAACAGATGGTCTTCAATAGGTGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGAAAAAAGGTGAAAGATGGCCACCAAACCACTGCTCAACTAATCAATGCAAACAACACACAGAATCCAATGCCCTCACCCTCCCTATCTCCTCCTAAACTAGATTCCCATGTTGTCCGTACAAAAGCTACCAAGTCCTCCAAGCTATTATTCCTAAACCCACCCCCTCATCACCCATCAATGCACTTATCCAACAACTCCAAGCCAGAGGCACAAGCAGAAGAAGCAATGCCTGTGGATGCTGTAATAAGTAACCAAATGGAATCTACTACATACGACGATGAAGAAAAAGAACTCTCAACAGATTTGCTCATAGATTTCAACGTGGGGGATATTTGCTTGTCTGATCTTCTCAACTCAGATTTCTCAAACACGTACAATTTCAACAACGAGCAGTTATCGCCTTGTTCGGACCAACCTGATCCCATGTTATTCTCTGATGAAGTTCTCAAGGACTGGACACACAGCAATTTTCCAGACGAAGCGAATGCTTCCAACAACCTTCATTCTTTCATTTCGTTCCTTGAGTCCAGTGAGGAAACACTAGAAGAATCATAA 894 0.4295 MGRSPCCSKEGLNRGAWTAHEDKILREYIRLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHKLLGNRWSSIGGRLPGRTDNEIKNYWNTNLGKKVKDGHQTTAQLINANNTQNPMPSPSLSPPKLDSHVVRTKATKSSKLLFLNPPPHHPSMHLSNNSKPEAQAEEAMPVDAVISNQMESTTYDDEEKELSTDLLIDFNVGDICLSDLLNSDFSNTYNFNNEQLSPCSDQPDPMLFSDEVLKDWTHSNFPDEANASNNLHSFISFLESSEETLEES 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01866 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g01866 297 FunFam MYB-related transcription factor 13 66 - -
Pumo5g01866 297 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 226 - -
Pumo5g01866 297 Gene3D - 69 136 - -
Pumo5g01866 297 CDD SANT 16 61 IPR001005 -
Pumo5g01866 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g01866 297 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo5g01866 297 SMART sant 13 63 IPR001005 -
Pumo5g01866 297 SMART sant 66 114 IPR001005 -
Pumo5g01866 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g01866 297 CDD SANT 71 112 IPR001005 -
Pumo5g01866 297 Gene3D - 14 66 - -
Pumo5g01866 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g01866 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g01866 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01866 Pumo-Chr5 52618019 52619396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01866 4 135 MYB Transcription Factor Family AT3G13540 65.672 2.02e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g01866 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01866 K09422 - gmx:100802704 471.47