Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01864 ATGAAAGAGAAGAAGACATTAGAGGGCAATCTTGTTTCCGGCGGTAGAAAAAGAAAATCACGGGGAGGTTCTTCTTCTTCTTCTTCTGCTCAAGATGGTGTGAAAAGGAGGGGTGGAAGAAAAGGTAAAGTTGTGGAGGAACACATGAAAAAGAAGATATTAGAGGACAAAATTCATGGTGAAAATGGTGGGGTTGATAGAAAGATTAAGAAAGATTGTGCTGAGATTCAAATGCCTGCTCCCACTACTGATTCTTCACAAAGCGGCATTCAGGAACCCTATGGTCTTAGGGCCCGTAAAGTCAACAAACAAGAGGTGTTGCTGCTGCCAGAAGTCAATGAGGAGGTTGAAAAGAAGTCCTCAATGTGCCACCAATGTCAGAGGAATGATAAAGGGAGGGTTGTGAATTGCAAGAGTTGTGAGTGGAAAAGATTTTGCATGCCCTGTATAACAAATTGGTATCCTCATTTGAAAGAGGATGATATTGCTCGGGCATGTCCTGTGTGCTGTGGTAACTGCAACTGCAAAGAATGCTTGAGATCCGATAAACTTATTAAAAAAATGAAGGACAAAACAAAAACCAATGAAGACGAGAAGATTGAACACTCTATGCAGTTGCTGCAAGTACTTCTTCCGTATTTGAGGCAGTTGGATGAAGAACAAATGATTGAGAATGAGACAGAAGCTAAGATACAAGGGATCTCGGTCTCAGAGCTAAATATAGTAAAGGCAAATTTTGCAAGAAATGAGTGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCAACCTTTGTCTCATCTGTTGCCATGAGCTTCGTAGTGGGCAGCTTCTAGGTGGTGCAGATCCAATTGAGTGGGAGTTTGTCTCTCAAGGACCTGGTTACTTGCATGCTCAAAAAGAAAGAATAAAGGTAAAACAAAATGCATCAAATGCTGATGCTAAGCCTGAGGTTCGTGAATGGTCAAGATCTGGGTGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGTCAATGACGAATGTAACCATGGTTTCCTTGAATTGAGAACCATATTAGGCAAACATTTTATCACTGAGATAGTGCATAAAGCGAACGAACTAGCACATGCATTCAATCTTCAAGATGTAGTTAAGACCCCTGACAACGTCTGTTCATGTTTGAGGCTTGATAGTAACACAGATGTTAGATATAATAATATGAGGAAGGCTGCTTCCCGTGAAGATTCTAGTGACAACTATTTATACTGTCCTAGGGCTGTAGATCTACAGCCCAAGGATTTAATGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAACGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAACTAACACTAAGCATGATCAACATTTGGATGTGATGGCAATTGATTGCTTAGATTGGTGTGAGAAAGAAGTTCATAGCCACCAATTCTTTACTGGCTATACAAAAGGTCGTATGGATTGGCTTGGTTGGCCTCAAATATTGAAATTAAAAGATTGGCCTCCTAATTTATTTGAGGAACGTTTGCCTCGTCATTGTGCTGAGTTCATATCTTGCTTGCCCTTCAAGGAATATACTGATCCTCTAAGAGGTGCTCTTAACCTTGCCGTGAAGTTGCCTTATGATTGTCTAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAGTTTGGGCGTGGTGATTCAGTGACCAAGCTCCATTGTGACATGTCTGATGCAGTAAATCTGTTGACTCATATTGCTGAAGTGAAATTGTACCCAGAGCAACTTACTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTACTTGGTGATGATCAGGATGGAGAAACCAAAGTTGGAAATAATTCATCTTCTACCATAAGTGCTTTGGACAAGCAAAATCGTGTCCAAGTCATGGAAAATGAAGGTGCTCTCTGGGATATTTTTCGGAAACAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTCAAAGAGTTTAGGCATATCCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGGTAAACTGA 2310 0.4126 MKEKKTLEGNLVSGGRKRKSRGGSSSSSSAQDGVKRRGGRKGKVVEEHMKKKILEDKIHGENGGVDRKIKKDCAEIQMPAPTTDSSQSGIQEPYGLRARKVNKQEVLLLPEVNEEVEKKSSMCHQCQRNDKGRVVNCKSCEWKRFCMPCITNWYPHLKEDDIARACPVCCGNCNCKECLRSDKLIKKMKDKTKTNEDEKIEHSMQLLQVLLPYLRQLDEEQMIENETEAKIQGISVSELNIVKANFARNECVYCDNCKTSIFDYHRSCTKCSFNLCLICCHELRSGQLLGGADPIEWEFVSQGPGYLHAQKERIKVKQNASNADAKPEVREWSRSGWHAESNGSIPCPKVNDECNHGFLELRTILGKHFITEIVHKANELAHAFNLQDVVKTPDNVCSCLRLDSNTDVRYNNMRKAASREDSSDNYLYCPRAVDLQPKDLMHFQWHWEKGEPVIVSNVLERTSGLSWEPLVMWRAFRQITNTKHDQHLDVMAIDCLDWCEKEVHSHQFFTGYTKGRMDWLGWPQILKLKDWPPNLFEERLPRHCAEFISCLPFKEYTDPLRGALNLAVKLPYDCLKPDMGPKTYIAYGFPQEFGRGDSVTKLHCDMSDAVNLLTHIAEVKLYPEQLTAIEKLKQKHFEQDKRELLGDDQDGETKVGNNSSSTISALDKQNRVQVMENEGALWDIFRKQDVPKLQEYLKKHFKEFRHIHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKVN 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01864 769 Gene3D Cupin 427 769 - -
Pumo5g01864 769 MobiDBLite consensus disorder prediction 19 33 - -
Pumo5g01864 769 MobiDBLite consensus disorder prediction 1 15 - -
Pumo5g01864 769 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 25 767 IPR045109 GO:0032454|GO:0033169
Pumo5g01864 769 SUPERFAMILY Clavaminate synthase-like 440 766 - -
Pumo5g01864 769 ProSiteProfiles JmjC domain profile. 559 769 IPR003347 -
Pumo5g01864 769 MobiDBLite consensus disorder prediction 1 48 - -
Pumo5g01864 769 SMART cupin_9 540 767 IPR003347 -
Pumo5g01864 769 Pfam JmjC domain, hydroxylase 656 769 IPR003347 -
Pumo5g01864 769 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01864 Pumo-Chr5 52347112 52441206 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo5g01864 JmjC 1e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01864 K15601 - gmx:100780803 1160.59