Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01856 ATGTTGTTACCAAAAAAGGAAGTAGCAGGATGTGCTTTAGTGAAGATCATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTCTGAGAAGAAAATGCATGCCGGATTGCATTTTTGCGCCATATTTCCCACCGGAAGAGCCTCAAAAGTTTGCGAATGTTCACAAGATTTTTGGTGCAAGCAACGTGAGCAAGCTTCTGAACGAGGTGCAGCCCCACCAGAGGGAGGATGCAGTGAACTCCCTGGCCTATGAAGCCGAGGCAAGGATAAAGGATCCAGTGTATGGCTGCGTTGGCGCGATTTCGGTGCTCCAGAGGCAAGTGATTAGGCTCCAGAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTACACCTGCAATGAAATGCCAACTACTACTCATCATCAAGATCATGGGAGAAGAATGGGTGGTGATGGGGGTGGTGGTGGTTCCTCTACTCTTGGTCAATCTCCTGGTTACTATTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 564 0.4805 MLLPKKEVAGCALVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTTTHHQDHGRRMGGDGGGGGSSTLGQSPGYYYPSPWNNDPLGDGYHRGDNNM 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01856 187 Coils Coil 105 125 - -
Pumo5g01856 187 MobiDBLite consensus disorder prediction 136 187 - -
Pumo5g01856 187 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
Pumo5g01856 187 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Pumo5g01856 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01856 Pumo-Chr5 51986341 51987976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01856 14 129 AS2 family AT3G27650 81.897 1.66e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g01856 LOB 1.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01856 - - gmx:100306630 337.806