Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01843 ATGCAGAAGGAGTCATGGAACGAAGAGGAGGACAGCATCCTGATCGAAGCTCACAGGGAGGTCGGGAACAGGTGGGCAGAAATCGCGAGGAGAATGCCGGGCAGGACGGAAAACACCATCAAGAACCACTGGAACGCGACCAAGCGTCGCCAGAGCGCGAAGAGGATGAGGAACAAGCGCAGGAGTTCAAAGGGACCCACACTTCTGGAGAACTACATAAAGGAAGTCACTGCAGCAGAAGAGGCCGAAAAGGAGCTGAAGAAATCCATGAGCAAGATGACCCTAAAGGGCGAAAGTACTAGCTGCACCCCCAACAACACCAAACCCACCACCAACCTGCAGGGTCTCTTTAGGGTTCGGTACGAGAGCTCAGAGGGTGACTTCAGTTCTGAGGAGGATGAGATTGGGTGGAGTGTGCAGCACCACCATGGTGGTGGCTATGTGCCTATGATGGTGAATGCTGCTATGGAGGATGGGACAATGGGTTACGAGGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAAGAAGGAAATGGATCTCATGGAGATGATCTATAGAAAAGCTTAA 570 0.5281 MQKESWNEEEDSILIEAHREVGNRWAEIARRMPGRTENTIKNHWNATKRRQSAKRMRNKRRSSKGPTLLENYIKEVTAAEEAEKELKKSMSKMTLKGESTSCTPNNTKPTTNLQGLFRVRYESSEGDFSSEEDEIGWSVQHHHGGGYVPMMVNAAMEDGTMGYEVAMEMAPEVQMKKEMDLMEMIYRKA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01843 189 Coils Coil 69 89 - -
Pumo5g01843 189 PANTHER MYB PROTEIN-RELATED 2 81 - -
Pumo5g01843 189 CDD SANT 5 48 IPR001005 -
Pumo5g01843 189 Gene3D - 5 68 - -
Pumo5g01843 189 ProSiteProfiles Myb-like domain profile. 1 48 IPR001005 -
Pumo5g01843 189 MobiDBLite consensus disorder prediction 47 62 - -
Pumo5g01843 189 SUPERFAMILY Homeodomain-like 3 52 IPR009057 -
Pumo5g01843 189 MobiDBLite consensus disorder prediction 93 111 - -
Pumo5g01843 189 SMART sant 2 50 IPR001005 -
Pumo5g01843 189 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Pumo5g01843 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Pumo5g01843 189 MobiDBLite consensus disorder prediction 30 67 - -
Pumo5g01843 189 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01843 Pumo-Chr5 51641385 51641954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01843 1 76 MYB Transcription Factor Family AT4G18770 61.842 8.62e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g01843 Myb_DNA-binding 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01843 K09422 - gmx:100805329 275.018